CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.37459.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 PtpAffx.37459.1.S1_at CK090406 hypothetical protein - 3e-59 At2g30590 WRKY21 S.X. H.G.
0.45 72.3 PtpAffx.56693.1.S1_at CF235424 hypothetical protein - 2e+0 At2g24140 unknown protein S.X. H.G.
0.37 62.3 PtpAffx.8725.2.A1_at CV232347 hypothetical protein - 2e+1 At5g40530 - S.X. H.G.
0.35 59.7 Ptp.6782.1.S1_at CA824799 rna-dependent RNA polymerase - 3e-8 At3g49500 RDR6 (RNA-DEPENDENT RNA POLYMERASE 6) S.X. H.G.
0.35 59.7 PtpAffx.3521.1.A1_at CV256272 hypothetical protein - 3e-3 At5g13890 unknown protein S.X. H.G.
0.33 57.5 Ptp.5111.1.S1_at CV226011 hypothetical protein - 1e-94 At3g13670 protein kinase family protein S.X. H.G.
0.31 53.7 PtpAffx.24154.1.A1_at CV272038 hypothetical protein - 3e-8 At1g27752 - S.X. H.G.
0.31 53.7 PtpAffx.52999.1.S1_at DN502552 - - 3e-2 At4g29290 LCR26 (Low-molecular-weight cysteine-rich 26) S.X. H.G.
0.30 52.0 Ptp.2343.1.S1_at CV262958 hypothetical protein - 1e-23 At2g45010 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.126566.1.S1_at CV265896 hypothetical protein - 4e-21 At2g45260 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 98.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-52 208 PtpAffx.37459.2.S1_at CV268877 hypothetical protein - 4e-18 At2g30590 WRKY21 C.G. S.X.
0.20 1e-46 188 PtpAffx.61240.1.A1_at DN487796 hypothetical protein - 6e-40 At5g28650 WRKY74 C.G. S.X.
0.11 1e-40 169 PtpAffx.202048.1.S1_at pmrna4082 hypothetical protein - 2e-32 At4g24240 WRKY7 C.G. S.X.
0.13 6e-33 143 PtpAffx.54256.2.A1_s_at CV229094 hypothetical protein - 8e-33 At4g24240 WRKY7 C.G. S.X.
0.11 6e-33 143 Ptp.726.1.A1_at CV225822 hypothetical protein - 1e-36 At4g24240 WRKY7 C.G. S.X.
0.07 9e-23 109 PtpAffx.54256.1.A1_at CV268729 - - 4e-17 At4g24240 WRKY7 C.G. S.X.
0.06 5e-15 83 PtpAffx.65912.1.S1_at CV258480 - - 2e-16 At2g24570 WRKY17 C.G. S.X.
0.13 2e-14 81 PtpAffx.63488.1.S1_at CV232703 - - 4e-10 At4g31550 WRKY11 C.G. S.X.
0.07 2e-11 71 PtpAffx.11208.1.A1_at CV255185 hypothetical protein - 5e-20 At2g24570 WRKY17 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-59 230 Arabidopsis thaliana At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). - - - C.G. S.X.
0.22 7e-42 173 Glycine max Gma.15748.2.S1_at BQ612588 transcription factor - 6e-5 At2g30590 WRKY21 C.G. S.X.
0.08 1e+0 34 Hordeum vulgare Contig23011_at Contig23011 - - 3e-26 At5g28650 WRKY74 C.G. S.X.
0.07 7e-15 83 Oryza sativa Os.27274.1.S1_at - - - 0 C.G. S.X.
0.11 2e-4 48 Triticum aestivum Ta.14320.1.A1_at BU100245 WRKY16 transcription factor - 4e-8 At5g28650 WRKY74 C.G. S.X.
0.19 4e-12 71 Vitis vinifera 1619424_at BQ800205 hypothetical protein LOC100267695 - 5e-9 At4g23550 WRKY29 C.G. S.X.
0.13 3e-20 99 Zea mays Zm.9098.1.A1_a_at BM336161 Hypothetical protein LOC100192894 - 6e-6 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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