CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.37297.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.37297.1.A1_at CV257396 hypothetical protein - 5e-3 At1g70290 ATTPS8 S.X. H.G.
0.77 94.9 PtpAffx.15038.1.A1_at CV266349 hypothetical protein - 4e+0 At3g43290 unknown protein S.X. H.G.
0.73 93.6 PtpAffx.204392.1.S1_at pmrna8622 hypothetical protein - 3e-12 At1g08320 bZIP family transcription factor S.X. H.G.
0.63 88.1 PtpAffx.160139.1.A1_at CV244980 hypothetical protein - 4e-17 At4g33950 OST1 (OPEN STOMATA 1) S.X. H.G.
0.50 78.6 PtpAffx.212767.1.S1_at pmrna24981 hypothetical protein - 1e-16 At1g23870 ATTPS9 S.X. H.G.
0.36 61.6 PtpAffx.158411.1.S1_at CX182442 hypothetical protein - 2e+0 At3g22183 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.4 99.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.6 99.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
12.4 99.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.0 76.2 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-127 456 PtpAffx.212767.1.S1_at pmrna24981 hypothetical protein - 1e-16 At1g23870 ATTPS9 C.G. S.X.
0.13 4e-94 345 PtpAffx.210555.1.S1_at pmrna20709 hypothetical protein - 4e-16 At1g23870 ATTPS9 C.G. S.X.
0.34 9e-18 91 PtpAffx.114552.1.A1_at CV254918 - - 1e-2 At5g26170 WRKY50 C.G. S.X.
0.07 3e-8 59 PtpAffx.79915.1.S1_s_at CV233367 hypothetical protein - 3e-6 At1g23870 ATTPS9 C.G. S.X.
0.03 1e-4 48 PtpAffx.214417.1.S1_at pmrna28044 hypothetical protein - 2e-15 At2g18700 ATTPS11 C.G. S.X.
0.04 2e-3 44 PtpAffx.57317.1.S1_at CV256775 hypothetical protein - 2e-9 At4g17770 ATTPS5 C.G. S.X.
0.03 3e-2 40 PtpAffx.44478.1.S1_at CV230884 - - 5e-16 At1g06590 unknown protein C.G. S.X.
0.03 5e-1 36 PtpAffx.33033.1.A1_at CK090138 - - 5e+0 At4g39540 shikimate kinase family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.206352.1.S1_at pmrna12608 hypothetical protein - 9e-2 At3g08760 ATSIK C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Arabidopsis thaliana At1g70290 843365 ATTPS8 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. - - - C.G. S.X.
0.13 8e-9 61 Glycine max GmaAffx.34586.1.S1_at AW307453 - - 3e-4 At1g70290 ATTPS8 C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEl0007A07r2_at HVSMEl0007A07r2 - - 4e-2 At5g54340 zinc finger (C2H2 type) protein-related C.G. S.X.
0.03 3e+0 34 Oryza sativa Os04g0347700 AK062337.1 - Hypothetical protein 3e-1 At5g28060 40S ribosomal protein S24 (RPS24B) C.G. S.X.
0.11 9e-5 48 Triticum aestivum Ta.30416.3.S1_a_at CA699400 - - 2e-4 At1g06410 ATTPS7 C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1606788_s_at CF204720.1 9-cis-epoxycarotenoid dioxygenase 1 - 1e-1 At1g18060 unknown protein C.G. S.X.
0.04 2e-3 42 Zea mays Zm.10067.1.A1_at BM349883 - - 7e-1 At2g18700 ATTPS11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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