CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.37259.1.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.37259.1.A1_a_at CV276577 hypothetical protein - 1e-11 At1g65230 unknown protein S.X. H.G.
0.61 87.0 Ptp.5883.1.S1_at CV231755 hypothetical protein - 6e-4 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein S.X. H.G.
0.60 86.0 PtpAffx.121064.1.A1_at CV278248 hypothetical protein - 2e-9 At1g23400 CAF2 S.X. H.G.
0.42 68.6 Ptp.3969.1.S1_s_at BU867417 hypothetical protein - 2e-18 At5g22800 EMB1030 (EMBRYO DEFECTIVE 1030) S.X. H.G.
0.40 67.0 Ptp.4833.1.S1_at CV236741 hypothetical protein - 3e-42 At5g13650 elongation factor family protein S.X. H.G.
0.36 61.6 PtpAffx.79264.1.A1_s_at CV279976 hypothetical protein - 1e-1 At3g22090 unknown protein S.X. H.G.
0.20 34.6 Ptp.805.1.S1_at CK089501 hypothetical protein - 1e-23 At1g54780 thylakoid lumen 18.3 kDa protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 97.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9 96.5 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8 96.4 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3 95.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4 94.0 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 PtpAffx.82441.1.A1_at CV245883 hypothetical protein - 1e+0 At5g41765 unknown protein C.G. S.X.
0.02 8e-1 36 PtpAffx.5621.1.A1_at CV241651 hypothetical protein - 3e-11 At1g54850 - C.G. S.X.
0.02 8e-1 36 PtpAffx.200057.1.S1_at pmrna108 hypothetical protein - 6e-10 At1g51110 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.02 8e-1 36 Ptp.5474.1.S1_at CF228860 - - 4e-16 At1g11930 alanine racemase family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.5406.1.A1_a_at CV283796 hypothetical protein - 1e-10 At2g15290 TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21) C.G. S.X.
0.02 3e+0 34 PtpAffx.39383.1.A1_at CK095040 - - 2e+1 At4g04957 - C.G. S.X.
0.01 3e+0 34 PtpAffx.216572.1.S1_at pmrna31429 cc-nbs-lrr resistance protein - 3e-2 At1g22750 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.10935.1.S1_at CX169916 hypothetical protein - 4e-1 At4g09550 unknown protein C.G. S.X.
0.02 3e+0 34 Ptp.6550.1.S1_s_at CF231575 hypothetical protein - 9e-12 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-11 71 Arabidopsis thaliana At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB - - - C.G. S.X.
0.23 2e-17 91 Glycine max Gma.8182.1.S1_a_at CD401769 - - 5e-12 At1g65230 unknown protein C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig8260_s_at Contig8260 - - 2e+0 At1g65230 unknown protein C.G. S.X.
0.04 7e-2 40 Oryza sativa Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein C.G. S.X.
0.04 1e+1 32 Triticum aestivum TaAffx.122229.1.S1_at BG313852 - - 2e+1 At5g57300 UbiE/COQ5 methyltransferase family protein C.G. S.X.
0.28 1e-26 119 Vitis vinifera 1607753_at CA816321 hypothetical protein LOC100263239 - 1e-6 At1g65230 unknown protein C.G. S.X.
0.01 2e+1 30 Zea mays Zm.9341.1.A1_at BM348037 - - 2e+0 At3g44140 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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