Gene omics information

Query gene ID PtpAffx.3718.1.A1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5683.9PtpAffx.3718.1.A1_atCX167706hypothetical protein-6e-31At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinS.X.H.G.
0.7794.9PtpAffx.24127.2.A1_a_atCV274197hypothetical protein-6e-6At3g51000epoxide hydrolase, putativeS.X.H.G.
0.7393.6PtpAffx.158416.1.S1_atCV131381hypothetical protein-9e-24At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinS.X.H.G.
0.6187.0PtpAffx.24127.1.S1_atCV256258hypothetical protein-6e-4At3g51000epoxide hydrolase, putativeS.X.H.G.
0.2645.2PtpAffx.18489.1.A1_s_atCV245016hypothetical protein-5e-3At1g49050aspartyl protease family proteinS.X.H.G.
0.0812.9PtpAffx.22348.1.S1_atAI165753--1e-22At5g48380leucine-rich repeat family protein / protein kinase family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.497.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.796.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
4.295.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.092.9GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.155e-57222PtpAffx.158416.1.S1_atCV131381hypothetical protein-9e-24At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.032e-138PtpAffx.6692.5.A1_a_atCV265475--9e-5At1g06330copper-binding family proteinC.G.S.X.
0.026e-136PtpAffx.206410.1.S1_atpmrna12734hypothetical protein-1e-27At2g03500myb family transcription factorC.G.S.X.
0.022e+034PtpAffx.56880.1.A1_atCV247961--1e+0At2g38790unknown proteinC.G.S.X.
0.022e+034PtpAffx.22880.1.A1_atBP936826--4e+0At5g52810ornithine cyclodeaminase/mu-crystallin family proteinC.G.S.X.
0.012e+034PtpAffx.222706.1.S1_atpmrna40290--2e-33At3g04820pseudouridine synthaseC.G.S.X.
0.012e+034PtpAffx.217731.1.S1_x_atpmrna33111hypothetical protein-2e-11At1g78650POLD3C.G.S.X.
0.012e+034PtpAffx.217731.1.S1_atpmrna33111hypothetical protein-2e-11At1g78650POLD3C.G.S.X.
0.012e+034PtpAffx.215745.1.S1_atpmrna30120hypothetical protein-2e-11At2g21480protein kinase family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.296e-31135Arabidopsis thalianaAt5g63620836482oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV---C.G.S.X.
0.406e-41169Glycine maxGma.8238.1.S1_atAW350572--8e-21At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.164e-1891Hordeum vulgareContig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.212e-1377Oryza sativaOs08g0109200AK101912.1-Zinc-containing alcohol dehydrogenase superfamilyprotein6e-11At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.035e-136Triticum aestivumTaAffx.83462.1.S1_atCA657360--9e-1At4g15750invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.028e+030Vitis vinifera1622664_atCB979197--4e+0At4g32870unknown proteinC.G.S.X.
0.154e-21101Zea maysZm.14094.1.S1_atCO519882S-glutathione dehydrogenase/class III alcohol dehydrogenase-3e-3At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage