CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.3647.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.3647.1.A1_at CV230293 hypothetical protein - 9e-5 At2g26680 - S.X. H.G.
0.43 69.7 Ptp.2955.1.A1_at DN489174 hypothetical protein - 5e-19 At5g13610 unknown protein S.X. H.G.
0.35 59.7 PtpAffx.218536.1.S1_s_at pmrna34192 hypothetical protein - 7e-1 At2g19700 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.2405.1.S1_at CK090525 hypothetical protein - 2e-17 At5g42370 unknown protein S.X. H.G.
0.26 45.2 PtpAffx.128057.1.A1_at CV232767 hypothetical protein - 3e-26 At4g33410 signal peptide peptidase family protein S.X. H.G.
0.24 41.8 PtpAffx.216142.1.S1_at pmrna30747 enhancer of polycomb-like protein - 7e-29 At1g16690 transcription factor-related S.X. H.G.
0.23 40.5 Ptp.4121.1.S1_s_at BP934370 glutathione-dependent formaldehyde dehydrogenase - 1e-44 At5g43940 HOT5 (sensitive to hot temperatures 5) S.X. H.G.
0.21 36.5 PtpAffx.145088.1.A1_at DN488679 hypothetical protein - 1e+0 At3g50900 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.4 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 1e-23 111 PtpAffx.37384.1.A1_at CV254492 - - 9e-4 At2g26680 - C.G. S.X.
0.01 5e-1 36 PtpAffx.208164.1.S1_at pmrna16236 sulfate/bicarbonate/oxalate exchanger and transporter sat-1 - 3e-13 At3g51895 SULTR3 C.G. S.X.
0.03 2e+0 34 PtpAffx.31574.2.A1_at AJ777282 - - 2e-23 At1g77710 - C.G. S.X.
0.04 2e+0 34 PtpAffx.223312.1.S1_at pmrna41240 hypothetical protein - 9e-2 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.01 2e+0 34 PtpAffx.214619.1.S1_s_at pmrna28407 hypothetical protein - 3e-34 At4g25940 epsin N-terminal homology (ENTH) domain-containing protein C.G. S.X.
0.02 8e+0 32 PtpAffx.74706.1.A1_at CV243425 hypothetical protein - 7e-30 At3g17210 HS1 (HEAT STABLE PROTEIN 1) C.G. S.X.
0.02 8e+0 32 PtpAffx.74706.1.A1_s_at CV243425 hypothetical protein - 7e-30 At3g17210 HS1 (HEAT STABLE PROTEIN 1) C.G. S.X.
0.02 8e+0 32 PtpAffx.7303.1.A1_at CV264426 - - 2e+0 At5g11840 unknown protein C.G. S.X.
0.02 8e+0 32 PtpAffx.66254.1.S1_at DN501858 hypothetical protein - 2e-9 At3g47800 aldose 1-epimerase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-5 48 Arabidopsis thaliana At2g26680 817209 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OBPAFV - - - C.G. S.X.
0.03 8e+0 32 Glycine max PsAffx.psMY010iA10r_s_at PsAffx.psMY010iA10r - - 1e-1 At1g12390 cornichon family protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig22852_at Contig22852 - - 6e-1 At5g24250 unknown protein C.G. S.X.
0.05 2e-1 38 Oryza sativa Os03g0566600 AK063379.1 - Methyltransferase FkbM domain containing protein 2e+0 At2g26680 - C.G. S.X.
0.04 6e+0 32 Triticum aestivum Ta.9942.1.S1_at BJ235183 - - 4e+0 At1g17130 cell cycle control protein-related C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1622201_at CB835667 - - 1e+0 At4g36450 ATMPK14 (Mitogen-activated protein kinase 14) C.G. S.X.
0.05 9e+0 30 Zea mays Zm.4487.1.A1_at AI734409 SAM-dependent methyltransferase - 2e+0 At3g53235 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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