Gene omics information

Query gene ID	PtpAffx.35633.1.A1_at
Gene name	nbs-lrr resistance protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.114068.1.S1_s_at	CV272580	cytochrome P450	-	1e+0	At2g07521	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.212692.1.S1_at	pmrna24817	hypothetical protein	-	3e-13	At2g22660	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.0	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.7	98.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.9	98.4	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.7	98.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.2	98.1	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.2	97.6	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.8	96.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	890	Ptp.6111.1.S1_at	CV264294	nbs-lrr resistance protein	-	4e-5	At4g33300	ADR1-L1 (ADR1-like 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	9e-145	513	Ptp.1570.1.S1_at	CK110334	nbs-lrr resistance protein	-	1e-2	At3g18230	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-29	129	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.85620.1.S1_at	CK093878	jumonji domain protein	-	8e-16	At1g08620	transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.221829.1.S1_at	pmrna38904	hypothetical protein	-	8e-3	At1g26930	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.213433.1.S1_at	pmrna26266	hypothetical protein	-	2e-11	At2g41080	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.204461.1.S1_at	pmrna8747	hypothetical protein	-	2e-20	At3g44820	protein binding / signal transducer	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.203142.1.S1_at	pmrna6227	hypothetical protein	-	1e-7	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.127096.1.A1_at	CF234983	hypothetical protein	-	2e+0	At3g44820	protein binding / signal transducer	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At5g35610	833533	paired amphipathic helix repeat-containing protein	F:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	Gma.16434.1.S1_at	CD408731	-	-	6e-2	At1g52340	ABA2 (ABA DEFICIENT 2)	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	HV09G11u_x_at	HV09G11u	-	-	3e+0	At5g44310	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.03	8e-1	36	Oryza sativa	Os06g0698300	AK071637.1	-	Protein phosphatase 2C family protein	5e-14	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Triticum aestivum	Ta.7785.2.A1_at	BQ172351	-	-	3e+0	At5g65210	TGA1	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1614845_at	CF405772	hypothetical protein LOC100262902	-	1e+0	At1g65900	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	ZmAffx.1530.1.S1_at	40794996-12	-	-	6e-1	At1g34070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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