Gene omics information

Query gene ID	PtpAffx.35380.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	96.3	PtpAffx.35380.1.S1_a_at	CV256335	hypothetical protein	-	1e+0	Atmg00900	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.17949.1.A1_a_at	CV230098	hypothetical protein	-	3e-17	At5g13190	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.34171.2.S1_a_at	DN494098	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.68429.1.S1_at	DN493879	hypothetical protein	-	1e-8	At3g58710	WRKY69	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.12733.1.S1_at	CK102307	hypothetical protein	-	4e+0	At4g33465	SCRL22 (SCR-Like 22)	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.61027.1.S1_at	CV273874	hypothetical protein	-	1e-17	At2g26230	uricase / urate oxidase / nodulin 35, putative	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.4	98.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.2	97.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-4	48	PtpAffx.200345.1.S1_s_at	pmrna680	hypothetical protein	-	2e-17	At4g27745	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	5e-4	46	PtpAffx.97650.1.S1_at	CV229139	hypothetical protein	-	1e-15	At4g27745	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-3	44	Ptp.2432.1.S1_a_at	CK093484	hypothetical protein	-	4e-19	At4g27745	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.207431.1.S1_at	pmrna14747	hypothetical protein	-	5e-1	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.134039.1.A1_at	CV252009	hypothetical protein	-	1e+0	At3g60420	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.80282.1.S1_at	DN493986	hypothetical protein	-	3e+0	At3g03870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.27422.2.A1_at	CA934579	hypothetical protein	-	4e-4	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.221315.1.S1_at	pmrna38111	hypothetical protein	-	5e-50	At1g35530	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.208850.1.S1_at	pmrna17549	hypothetical protein	-	2e-1	At4g01590	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	Atmg00900	-	-	cytochrome c biogenesis orf256	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	36	Glycine max	Gma.2842.1.S1_at	BG511652	-	-	4e+0	Atcg00300	-	C.G.	S.X.	Please select
0.04	7e-1	34	Hordeum vulgare	Contig8632_at	Contig8632	-	-	9e-1	At5g02260	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	C.G.	S.X.	Please select
0.04	2e-4	48	Oryza sativa	Os12g0484700	AK121352.1	-	Yippee-like protein family protein	3e-5	At4g27745	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.82312.1.S1_s_at	CA673756	-	-	9e+0	At4g24470	TIFY1	C.G.	S.X.	Please select
0.03	2e-3	42	Vitis vinifera	1620207_at	CF213689	hypothetical protein LOC100252122	-	3e-2	At4g27745	-	C.G.	S.X.	Please select
0.08	1e-1	36	Zea mays	Zm.5188.1.S1_at	AW400008	protein yippee-like	-	6e-3	At4g27745	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage