Gene omics information

Query gene ID	PtpAffx.35277.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.35277.1.S1_at	BU874449	-	-	3e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.203985.1.S1_at	pmrna7862	hypothetical protein	-	3e+0	At5g64040	PSAN	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.115274.1.A1_at	CV225684	-	-	1e+1	At4g11880	AGL14 (agamous-like 14)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.13421.1.S1_at	BU823258	-	-	2e+0	At3g15870	oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.212609.1.S1_x_at	pmrna24688	hypothetical protein	-	3e+0	At5g56990	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.216698.1.S1_at	pmrna31647	hypothetical protein	-	4e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.0	99.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
18.9	99.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.4	98.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.5	98.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	PtpAffx.210279.1.S1_at	pmrna20219	hypothetical protein	-	2e-4	At3g49240	emb1796 (embryo defective 1796)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.28853.1.A1_at	CV245615	hypothetical protein	-	2e-53	At1g23280	MAK16 protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.206134.1.S1_at	pmrna12167	hypothetical protein	-	9e-1	At3g10120	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	36	Ptp.520.1.A1_at	CK088248	-	-	2e+0	At3g15660	GRX4 (GLUTAREDOXIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.88761.1.A1_s_at	CF235678	hypothetical protein	-	1e-1	At5g57780	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.206869.1.S1_at	pmrna13639	hypothetical protein	-	3e-1	At1g77010	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.201685.1.S1_at	pmrna3362	-	-	2e-16	At5g14050	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.161529.1.S1_at	CK110939	hypothetical protein	-	0	Atcg01090	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	Ptp.1923.1.A1_at	CK092873	-	-	1e+0	At1g53640	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At3g04280	819583	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.13449.1.A1_at	CD402146	-	-	3e+0	At5g59150	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)	C.G.	S.X.	Please select
0.05	1e-1	36	Hordeum vulgare	HVSMEc0009D09f_at	HVSMEc0009D09f	-	-	4e-39	Atcg00330	-	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os02g0169500	9630.m00678	-	-	2e-2	At1g69160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Triticum aestivum	TaAffx.98090.1.A1_at	BQ168724	-	-	2e+0	At1g29355	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1622530_at	BQ800497	hypothetical protein LOC100249036	-	9e-1	At4g19250	kelch repeat-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.1423.1.S1_at	40794996-98	-	-	3e+0	At4g23110	insulin-like growth factor binding	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage