Gene omics information

Query gene ID	PtpAffx.3423.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.3423.1.A1_at	DN491762	hypothetical protein	-	2e-14	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.218062.1.S1_s_at	pmrna33582	hypothetical protein	-	7e-1	At2g34420	LHB1B2	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.249.605.A1_at	CV276304	-	-	4e-4	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.26140.1.S1_at	CK111150	-	-	3e+0	At2g06983	SCRL16 (SCR-Like 16)	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.212630.1.S1_s_at	pmrna24725	hypothetical protein	-	2e-2	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.202836.1.S1_x_at	pmrna5621	hypothetical protein	-	4e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.139528.2.A1_at	CV228130	-	-	4e-10	At3g08570	protein binding / signal transducer	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	2e-138	492	PtpAffx.7352.1.S1_at	BU871074	hypothetical protein	-	1e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.64	2e-95	349	PtpAffx.108624.1.A1_at	CV232963	-	-	1e-16	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	8e-52	204	PtpAffx.219178.1.S1_at	pmrna35022	hypothetical protein	-	1e-68	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	8e-52	204	PtpAffx.213225.1.S1_s_at	pmrna25871	hypothetical protein	-	5e-71	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.206064.1.S1_at	pmrna12020	hypothetical protein	-	3e+0	At5g04045	Expressed protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.207675.1.S1_x_at	pmrna15240	hypothetical protein	-	0	At3g55200	splicing factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.207675.1.S1_at	pmrna15240	hypothetical protein	-	0	At3g55200	splicing factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.206119.1.S1_at	pmrna12134	hypothetical protein	-	9e-18	At1g60080	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.88488.1.A1_at	CV264576	hypothetical protein	-	6e-28	At2g32950	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-14	79	Arabidopsis thaliana	At2g40930	818691	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.12286.1.S1_at	CB375696	-	-	9e-1	At2g31390	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.07	4e-5	48	Hordeum vulgare	Contig6229_s_at	Contig6229	-	-	7e-7	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os11g0473200	AK106730.1	-	Ubiquitin carboxyl-terminal hydrolase 12 (EC3.1.2.15) (Ubiquitin thiolesterase 12)(Ubiquitin-specific processing protease 12)(Deubiquitinating enzyme 12)	2e-5	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-6	52	Triticum aestivum	Ta.12121.1.S1_at	CD887416	-	-	1e-5	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	Zm.3795.1.A1_at	BM335144	-	-	8e+0	At3g27328	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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