Gene omics information

Query gene ID	PtpAffx.3361.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.3361.1.S1_at	DN493891	-	-	4e+0	At5g11690	ATTIM17-3	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.201798.1.S1_at	pmrna3581	hypothetical protein	-	7e-1	At4g23030	MATE efflux protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.136947.1.S1_at	BU888550	-	-	1e+0	At2g39920	acid phosphatase class B family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.215165.1.S1_at	pmrna29205	hypothetical protein	-	5e+0	At5g11120	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.220143.1.S1_at	pmrna36493	-	-	1e-1	At1g76520	auxin efflux carrier family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.119162.1.A1_at	DN490244	-	-	1e+0	At2g26660	SPX2 (SPX DOMAIN GENE 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.6	99.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.9	98.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	PtpAffx.123118.1.A1_at	CK091422	-	-	1e+0	At5g18362	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.204839.1.S1_at	pmrna9555	hypothetical protein	-	8e-4	At3g08040	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e+0	32	PtpAffx.42018.1.A1_at	DN489169	hypothetical protein	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.32299.1.S1_at	CV233360	hypothetical protein	-	3e-14	At4g38960	zinc finger (B-box type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.224145.1.S1_at	pmrna42404	hypothetical protein	-	9e-1	At2g32560	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.221689.1.S1_at	pmrna38702	hypothetical protein	-	2e+0	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.215998.1.S1_at	pmrna30507	hypothetical protein	-	3e-17	At5g27680	RECQSIM (Arabidopsis RecQ helicase sim)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.209578.1.S1_at	pmrna18957	hypothetical protein	-	1e-14	At1g64570	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.203295.1.S1_s_at	pmrna6531	high mobility group family	-	5e-11	At4g23800	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g11690	831041	ATTIM17-3	mitochondrial inner membrane translocase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.24322.1.S1_at	BF013527	-	-	2e-1	At3g20600	NDR1 (non race-specific disease resistance 1)	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	HVSMEn0015M01r2_s_at	HVSMEn0015M01r2	-	-	8e-1	At4g22170	F-box family protein	C.G.	S.X.	Please select
0.04	7e+0	32	Oryza sativa	OsAffx.15494.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Triticum aestivum	Ta.24104.1.A1_at	AB003279.1	-	-	6e-1	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1617747_at	CF519272	hypothetical protein LOC100252449	-	2e+1	Atmg00860	-	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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