Gene omics information

Query gene ID PtpAffx.32882.1.A1_at
Gene name histone deacetylase
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1PtpAffx.32882.1.A1_atCK096564histone deacetylase-3e-29At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.6791.1PtpAffx.151163.1.S1_atCX173673hypothetical protein-6e-15At2g28930APK1BS.X.H.G.
0.4067.0PtpAffx.5556.1.A1_s_atCV243934f-box family protein-4e-1At5g62820integral membrane protein, putativeS.X.H.G.
0.3357.5PtpAffx.210645.1.S1_atpmrna20881hypothetical protein-4e-37At5g50380ATEXO70F1 (exocyst subunit EXO70 family protein F1)S.X.H.G.
0.2950.5PtpAffx.205333.1.S1_atpmrna10561hypothetical protein-3e-107At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)S.X.H.G.
0.2543.6PtpAffx.67827.1.S1_atCV260562hypothetical protein-1e-4At5g46840RNA recognition motif (RRM)-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.897.4GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
5.296.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.395.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.193.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.436e-59228PtpAffx.95267.1.A1_atCV254589histone deacetylase-8e-5At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.155e-756PtpAffx.5718.1.A1_atCV237477--4e-1At4g23380unknown proteinC.G.S.X.
0.121e-448PtpAffx.6033.1.S1_atCA932145histone deacetylase-2e-91At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.128e-342PtpAffx.6033.2.S1_atBU889316histone deacetylase-9e-55At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.021e-138PtpAffx.201449.1.S1_atpmrna2858histone deacetylase-4e-116At3g44680HDA9 (HISTONE DEACETYLASE 9)C.G.S.X.
0.025e-136PtpAffx.202137.1.S1_atpmrna4272hypothetical protein-3e-6At3g60580zinc finger (C2H2 type) family proteinC.G.S.X.
0.025e-136Ptp.8011.1.S1_atBU894633hypothetical protein-6e+0At5g50820anac097 (Arabidopsis NAC domain containing protein 97)C.G.S.X.
0.025e-136Ptp.4590.1.S1_s_atCV245441hypothetical protein-2e-4At4g29830VIP3 (vernalization independence 3)C.G.S.X.
0.032e+034PtpAffx.220014.1.S1_atpmrna36252hypothetical protein-3e-1At5g63530ATFP3C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.173e-29129Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.409e-52204Glycine maxGmaAffx.58612.2.S1_atAW306270--6e-28At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.031e-240Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.136e-26119Oryza sativaOs08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.096e-342Triticum aestivumTa.27150.1.S1_atCK162660--1e-56At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.441e-72272Vitis vinifera1620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.145e-32137Zea maysZm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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