Gene omics information

Query gene ID	PtpAffx.32368.2.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.32368.2.A1_at	CV238018	hypothetical protein	-	3e-49	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.4646.1.S1_a_at	CV283009	hypothetical protein	-	5e-25	At1g33810	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.5406.1.A1_a_at	CV283796	hypothetical protein	-	1e-10	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.5366.1.A1_at	CV256714	hypothetical protein	-	1e-59	At1g11750	CLPP6	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	835	PtpAffx.32368.1.S1_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	835	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-6	54	PtpAffx.161607.1.S1_at	CN519375	-	-	9e-14	At3g15000	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-2	40	PtpAffx.89262.2.S1_a_at	CV237169	hypothetical protein	-	1e-13	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	Ptp.4137.1.S1_at	DN499551	-	-	1e+0	At3g32090	transcription factor-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.22200.2.S1_at	CV241652	hypothetical protein	-	2e-19	At5g26200	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.205328.1.S1_at	pmrna10553	hypothetical protein	-	1e-6	At3g50430	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.225771.1.S1_at	pmrna45356	-	-	3e-3	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.224653.1.S1_s_at	pmrna43402	hypothetical protein	-	1e-23	At1g25390	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	3e-49	196	Arabidopsis thaliana	At2g33430	817907	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	6e-73	276	Glycine max	Gma.8154.1.S1_at	AW310537	-	-	5e-35	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.28	1e-34	147	Hordeum vulgare	Contig24791_at	Contig24791	-	-	2e-39	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.25	5e-28	127	Oryza sativa	Os04g0601800	AK062641.1	-	Plastid protein	3e-45	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	7e-32	139	Triticum aestivum	Ta.23199.1.S1_at	CA634433	-	-	2e-43	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.36	1e-73	276	Vitis vinifera	1608717_at	CF568867	-	-	2e-63	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.25	2e-27	123	Zea mays	Zm.10076.1.S1_at	BM379471	DAG protein	-	9e-15	At1g32580	plastid developmental protein DAG, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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