Gene omics information

Query gene ID	PtpAffx.32368.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	68.6	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.5406.1.A1_a_at	CV283796	hypothetical protein	-	1e-10	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.5867.1.S1_s_at	CV245725	hypothetical protein	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.4646.1.S1_a_at	CV283009	hypothetical protein	-	5e-25	At1g33810	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.224342.1.S1_at	pmrna42806	hypothetical protein	-	2e-17	At3g53700	MEE40 (maternal effect embryo arrest 40)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.5366.1.A1_at	CV256714	hypothetical protein	-	1e-59	At1g11750	CLPP6	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4121.1.S1_s_at	BP934370	glutathione-dependent formaldehyde dehydrogenase	-	1e-44	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	95.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1699	PtpAffx.32368.1.S1_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	835	PtpAffx.32368.2.A1_at	CV238018	hypothetical protein	-	3e-49	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.161607.1.S1_at	CN519375	-	-	9e-14	At3g15000	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.225292.1.S1_x_at	pmrna44535	hypothetical protein	-	4e+0	At5g56650	ILL1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.200457.1.S1_at	pmrna919	hypothetical protein	-	7e-4	At4g23020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	Ptp.7019.1.S1_at	CV244604	-	-	7e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	Ptp.7019.1.S1_s_at	CV244604	porin/voltage-dependent anion-selective channel protein	-	7e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.214824.1.S1_at	pmrna28697	hypothetical protein	-	3e-1	At2g29720	CTF2B	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.147220.1.A1_at	CV245014	-	-	2e+0	At1g55615	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	7e-40	165	Arabidopsis thaliana	At2g33430	817907	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	9e-65	248	Glycine max	Gma.8154.1.S1_at	AW310537	-	-	5e-35	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.32	4e-18	91	Hordeum vulgare	Contig24791_at	Contig24791	-	-	2e-39	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.24	4e-12	73	Oryza sativa	Os04g0601800	AK062641.1	-	Plastid protein	3e-45	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	4e-17	89	Triticum aestivum	Ta.7794.1.S1_x_at	BQ160699	-	-	7e-19	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.37	7e-53	206	Vitis vinifera	1608717_at	CF568867	-	-	2e-63	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.26	6e-14	77	Zea mays	Zm.10076.1.S1_at	BM379471	DAG protein	-	9e-15	At1g32580	plastid developmental protein DAG, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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