Gene omics information

Query gene ID	PtpAffx.32362.1.S1_at
Gene name	acyl:coa ligase acetate-coa synthetase-like protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.32362.1.S1_at	CV242633	acyl:coa ligase acetate-coa synthetase-like protein	-	2e-2	At1g68270	AMP-dependent synthetase and ligase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.224516.1.S1_s_at	pmrna43133	hypothetical protein	-	2e-9	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.735.1.A1_at	CV279844	-	-	4e-10	At1g01250	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.4493.1.A1_x_at	CV237113	hypothetical protein	-	6e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.119354.1.A1_at	BP935809	hypothetical protein	-	1e-4	At4g25640	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.25004.4.S1_a_at	CV237911	hypothetical protein	-	1e-3	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.679.1.S1_s_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.3	99.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.1	99.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.6	98.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
8.4	98.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	1267	Ptp.3038.1.A1_at	CV237450	acyl:coa ligase acetate-coa synthetase-like protein	-	6e-4	At1g68270	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-53	212	PtpAffx.67679.3.S1_a_at	CV231106	acyl:coa ligase acetate-coa synthetase-like protein	-	3e-1	At5g54460	wound-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-49	198	PtpAffx.218929.1.S1_at	pmrna34691	hypothetical protein	-	2e+0	At5g67600	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-47	192	PtpAffx.67679.1.A1_a_at	CV274422	acyl:coa ligase acetate-coa synthetase-like protein /// hypothetical protein	-	3e-2	At3g16910	AAE7 (ACYL-ACTIVATING ENZYME 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-47	192	PtpAffx.67679.1.A1_at	CV274422	hypothetical protein	-	3e-2	At3g16910	AAE7 (ACYL-ACTIVATING ENZYME 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-6	56	PtpAffx.205872.1.S1_at	pmrna11640	hypothetical protein	-	2e-7	At1g20560	AAE1 (ACYL ACTIVATING ENZYME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-6	56	PtpAffx.205872.1.S1_x_at	pmrna11640	hypothetical protein	-	2e-7	At1g20560	AAE1 (ACYL ACTIVATING ENZYME 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-4	50	PtpAffx.201552.1.S1_x_at	pmrna3052	hypothetical protein	-	2e-7	At2g17650	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-4	50	PtpAffx.201552.1.S1_at	pmrna3052	hypothetical protein	-	2e-7	At2g17650	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-2	42	Arabidopsis thaliana	At1g68270	843156	AMP-dependent synthetase and ligase family protein	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-7	59	Glycine max	GmaAffx.74080.1.S1_at	AW156663	-	-	6e-3	At1g65890	AAE12 (ACYL ACTIVATING ENZYME 12)	C.G.	S.X.	Please select
0.01	8e+0	32	Hordeum vulgare	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.03	5e-1	38	Oryza sativa	Os09g0555800	9637.m03271	-	AMP-dependent synthetase and ligase domaincontaining protein	2e-1	At1g65890	AAE12 (ACYL ACTIVATING ENZYME 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+1	32	Triticum aestivum	TaAffx.53262.1.S1_at	CA694467	-	-	1e+0	At2g39270	adenylate kinase family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1612395_s_at	CB974436	-	-	1e+0	At2g31725	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	32	Zea mays	Zm.5401.1.S1_at	AI065471	pollen-specific protein C13	-	5e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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