CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.32281.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.32281.1.A1_at CV225439 hypothetical protein - 2e-8 At1g67530 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein S.X. H.G.
0.50 78.6 Ptp.860.1.S1_s_at CX659955 hypothetical protein - 7e-16 At5g11090 serine-rich protein-related S.X. H.G.
0.40 67.0 Ptp.6305.2.A1_at DN484232 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein S.X. H.G.
0.25 43.6 PtpAffx.29939.1.A1_at CV275765 hypothetical protein - 7e-1 At1g53625 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.21461.1.S1_at DN488118 NAC domain protein, IPR003441 - 2e-3 At1g25580 ANAC008 (Arabidopsis NAC domain containing protein 8) S.X. H.G.
0.13 21.6 PtpAffx.9780.1.A1_at DN490439 hypothetical protein - 1e+0 At3g53490 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 8e-117 420 Ptp.3461.1.S1_s_at BU896604 hypothetical protein - 5e-7 At1g24330 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.215580.1.S1_at pmrna29857 hypothetical protein - 7e-69 At3g54190 - C.G. S.X.
0.04 1e-1 38 PtpAffx.210063.1.S1_at pmrna19821 cytochrome P450 - 2e-1 At1g15270 - C.G. S.X.
0.04 1e-1 38 PtpAffx.210063.1.S1_x_at pmrna19821 cytochrome P450 - 2e-1 At1g15270 - C.G. S.X.
0.00 5e-1 36 PtpAffx.222227.1.S1_at pmrna39502 hypothetical protein - 5e-29 At1g67120 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding C.G. S.X.
0.02 5e-1 36 PtpAffx.206035.1.S1_at pmrna11957 hypothetical protein - 6e-14 At2g40850 phosphatidylinositol 3- and 4-kinase family protein C.G. S.X.
0.04 2e+0 34 PtpAffx.52061.1.S1_at CK089686 - - 5e+0 At3g01319 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.249.134.S1_s_at CV261075 hypothetical protein - 1e-17 At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) C.G. S.X.
0.01 2e+0 34 PtpAffx.214374.1.S1_at pmrna27972 hypothetical protein - 5e-28 At2g18900 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-8 59 Arabidopsis thaliana At1g67530 843074 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV - - - C.G. S.X.
0.17 1e-4 48 Glycine max Gma.6865.1.S1_at BI971010 - - 3e-1 At4g24275 - C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig18786_at Contig18786 - - 1e+0 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.27439.1.S1_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.66055.1.S1_at BJ210143 - - 2e+0 At1g80700 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1609261_s_at CB982050 hypothetical protein LOC100264228 - 4e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.03 1e-1 36 Zea mays Zm.9086.1.A1_at AI649547 hypothetical protein LOC100280062 - 7e-2 At1g08160 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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