Gene omics information

Query gene ID	PtpAffx.31782.2.A1_a_at
Gene name	gtp-binding protein SAR1
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.31782.2.A1_a_at	CV272415	gtp-binding protein SAR1	-	4e-47	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.5219.1.A1_s_at	CN523722	hypothetical protein	-	5e-13	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.3127.1.S1_s_at	AJ777838	hypothetical protein	-	3e-52	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.85773.1.S1_at	CK107579	white-brown-complex ABC transporter family	-	6e-17	At1g53390	ATPase, coupled to transmembrane movement of substances	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	99.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
12.5	99.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.4	98.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.1	97.6	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	702	Ptp.3963.1.S1_at	DN488508	gtp-binding protein SAR1	-	5e-50	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	0	672	Ptp.3880.1.S1_at	CK091903	hypothetical protein	-	9e-80	At1g56330	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	660	PtpAffx.39678.1.S1_at	CX172487	hypothetical protein	-	3e-76	At1g56330	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	1e-93	343	PtpAffx.215714.1.S1_at	pmrna30066	hypothetical protein	-	7e-55	At1g56330	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	2e-92	339	Ptp.5570.1.S1_at	CV261857	hypothetical protein	-	5e-47	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.49	5e-81	301	PtpAffx.56113.1.A1_at	CV277642	-	-	4e-1	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	2e-68	260	PtpAffx.5383.1.S1_at	CV251335	gtp-binding protein SAR1	-	1e-44	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-3	44	PtpAffx.209041.1.S1_at	pmrna17898	-	-	5e-8	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-3	42	PtpAffx.41770.1.S1_at	CV244088	hypothetical protein	-	3e-67	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	4e-47	188	Arabidopsis thaliana	At1g09180	837438	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	1e-78	293	Glycine max	Gma.6113.1.S1_at	AW310349	-	-	3e-30	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	C.G.	S.X.	Please select
0.41	8e-56	216	Hordeum vulgare	Contig3844_at	Contig3844	-	-	5e-47	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	C.G.	S.X.	Please select
0.51	3e-31	137	Oryza sativa	Os12g0560300	AK060332.1	-	NTGB2 (Fragment)	5e-44	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	8e-24	111	Triticum aestivum	Ta.7164.1.S1_at	BJ229457	-	-	8e-68	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please select
0.48	1e-71	268	Vitis vinifera	1611184_at	BQ797235	hypothetical protein LOC100248702	-	6e-59	At1g56330	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)	C.G.	S.X.	Please select
0.47	3e-43	174	Zea mays	Zm.14470.1.S1_at	CA400454	-	-	8e-28	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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