CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.31307.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.31307.1.A1_s_at CV240581 hypothetical protein - 8e+0 Atcg00800 - S.X. H.G.
0.42 68.6 PtpAffx.207997.1.S1_at pmrna15871 hypothetical protein - 3e-1 At2g43280 far-red impaired responsive family protein / FAR1 family protein S.X. H.G.
0.33 57.5 PtpAffx.207998.1.S1_at pmrna15872 hypothetical protein - 5e-22 At1g25570 leucine-rich repeat protein-related S.X. H.G.
0.33 57.5 PtpAffx.7617.1.S1_a_at CA826002 actin 2 - 2e-79 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.29 50.5 PtpAffx.211038.1.S1_s_at pmrna21685 hypothetical protein - 3e-20 At5g18410 PIR121 S.X. H.G.
0.25 43.6 PtpAffx.152677.1.S1_at CX172956 - - 6e-12 At5g53100 oxidoreductase, putative S.X. H.G.
0.22 38.3 PtpAffx.152677.1.S1_s_at CX172956 hypothetical protein - 6e-12 At5g53100 oxidoreductase, putative S.X. H.G.
0.19 32.7 PtpAffx.201572.1.S1_s_at pmrna3087 hypothetical protein - 5e+0 Atcg01090 - S.X. H.G.
0.17 29.1 PtpAffx.1025.10.S1_a_at CX186298 vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine - 3e-83 At5g17920 ATMS1 S.X. H.G.
0.16 26.9 PtpAffx.157774.1.S1_at BU834744 hypothetical protein - 2e-2 At2g18730 diacylglycerol kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3 95.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.74 1e-76 286 PtpAffx.31307.1.A1_at CV240581 hypothetical protein - 8e+0 Atcg00800 - C.G. S.X.
0.29 7e-72 270 PtpAffx.207997.1.S1_at pmrna15871 hypothetical protein - 3e-1 At2g43280 far-red impaired responsive family protein / FAR1 family protein C.G. S.X.
0.02 3e+0 32 PtpAffx.222910.1.S1_at pmrna40634 hypothetical protein - 8e-1 At5g01910 unknown protein C.G. S.X.
0.01 3e+0 32 PtpAffx.210603.1.S1_at pmrna20801 hypothetical protein - 4e-1 At3g05660 AtRLP33 (Receptor Like Protein 33) C.G. S.X.
0.01 3e+0 32 PtpAffx.208807.1.S1_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.01 3e+0 32 PtpAffx.208807.1.S1_x_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.03 3e+0 32 PtpAffx.208190.1.S1_at pmrna16296 hypothetical protein - 2e-20 At3g23130 SUP (SUPERMAN) C.G. S.X.
0.02 3e+0 32 PtpAffx.204894.1.S1_at pmrna9666 hypothetical protein - 3e-37 At1g50460 HKL1 (HEXOKINASE-LIKE 1) C.G. S.X.
0.01 3e+0 32 PtpAffx.202952.1.S1_at pmrna5840 hypothetical protein - 2e-12 At1g79840 GL2 (GLABRA 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 30 Arabidopsis thaliana Atcg00800 - - encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex - - - C.G. S.X.
0.06 7e-1 34 Glycine max HgAffx.3456.1.A1_at CK349234 - - 8e-1 At2g11270 citrate synthase-related C.G. S.X.
0.06 4e+0 30 Hordeum vulgare HS05H08u_at HS05H08u - - 6e-1 At2g01340 unknown protein C.G. S.X.
0.04 4e+0 32 Oryza sativa OsAffx.20029.1.S1_at - - - 0 C.G. S.X.
0.05 6e-1 34 Triticum aestivum Ta.9864.1.S1_at BJ234498 - - 9e-1 At1g23240 caleosin-related family protein C.G. S.X.
0.04 1e+1 28 Vitis vinifera 1617850_at CF516123 - - 4e+0 Atmg00480 - C.G. S.X.
0.03 4e+0 30 Zea mays Zm.4202.1.A1_at CB350777 - - 6e-3 At3g25577 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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