CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.30944.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.30944.1.A1_at CV246079 hypothetical protein - 4e-22 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) S.X. H.G.
0.50 78.6 PtpAffx.1058.3.S1_a_at CV244568 hypothetical protein - 7e-53 At2g01250 60S ribosomal protein L7 (RPL7B) S.X. H.G.
0.33 57.5 PtpAffx.61857.1.S1_at CV259276 hypothetical protein - 6e-43 At1g57860 60S ribosomal protein L21 S.X. H.G.
0.07 11.6 Ptp.5768.2.S1_a_at BU879552 hypothetical protein - 5e-69 At1g08360 60S ribosomal protein L10A (RPL10aA) S.X. H.G.
0.07 11.6 Ptp.1984.1.S1_x_at CF936983 hypothetical protein - 8e-71 At2g34480 60S ribosomal protein L18A (RPL18aB) S.X. H.G.
0.04 6.9 PtpAffx.29901.1.S1_at CX176700 hypothetical protein - 3e-87 At4g24830 arginosuccinate synthase family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 PtpAffx.82607.1.A1_at CV245445 hypothetical protein - 2e-2 At5g20670 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.221606.1.S1_at pmrna38577 - - 7e-17 At5g52800 DNA primase C.G. S.X.
0.02 2e+0 34 Ptp.6141.1.S1_at DN488610 mitochondrial phosphate carrier protein - 5e-17 At3g48850 mitochondrial phosphate transporter, putative C.G. S.X.
0.02 2e+0 34 Ptp.1843.1.A1_at CV226158 hypothetical protein - 2e+0 At3g45248 - C.G. S.X.
0.03 2e+0 34 Ptp.1109.1.A1_at CK090221 - - 4e-6 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.01 8e+0 32 PtpAffx.91812.1.S1_s_at DN492283 multicopper oxidase - 6e-15 At1g76160 sks5 (SKU5 Similar 5) C.G. S.X.
0.02 8e+0 32 PtpAffx.82377.1.A1_at CV249131 hypothetical protein - 8e-9 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.03 8e+0 32 PtpAffx.54771.1.A1_at DN488502 gibberellin 20-oxidase - 1e-3 At4g25420 GA20OX1 C.G. S.X.
0.04 8e+0 32 PtpAffx.43944.1.A1_at CV252494 - - 1e+0 At1g17510 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-22 105 Arabidopsis thaliana At4g35490 829701 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, intracellular;BOAMFP - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.31234.1.A1_at BE823971 - - 8e-10 At5g45780 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig3474_s_at Contig3474 - - 4e+0 At3g23850 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa Os07g0137600 AK120248.1 - Conserved hypothetical protein 6e+0 At5g28919 - C.G. S.X.
0.04 2e-2 40 Triticum aestivum Ta.2757.1.S1_at AB055152.1 mitochondrial ribosomal protein L11 - 2e-3 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) C.G. S.X.
0.05 2e-3 42 Vitis vinifera 1617451_at BQ793039 hypothetical protein LOC100257643 - 3e-7 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) C.G. S.X.
0.09 6e-4 44 Zea mays Zm.18293.1.S1_at CO528124 hypothetical protein LOC100273719 - 5e-1 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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