Gene omics information

Query gene ID	PtpAffx.30567.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.30567.1.A1_at	CV261850	hypothetical protein	-	1e-1	At5g41071	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.213954.1.S1_at	pmrna27198	pho1-like protein	-	3e-13	At2g03260	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.127785.1.S1_at	CV244219	hypothetical protein	-	6e+0	At4g35070	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.75514.1.A1_at	CV267254	-	-	8e-2	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.211977.1.S1_at	pmrna23523	hypothetical protein	-	6e-3	At1g29000	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.201722.1.S1_at	pmrna3422	hypothetical protein	-	2e+0	At3g45170	zinc finger (GATA type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.9	98.7	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.3	98.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.1	98.1	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	4e-2	40	PtpAffx.208770.1.S1_s_at	pmrna17383	hypothetical protein	-	6e-1	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.206385.1.S1_at	pmrna12681	hypothetical protein	-	7e-12	At4g29750	RNA binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-1	36	PtpAffx.208769.1.S1_at	pmrna17382	hypothetical protein	-	2e-2	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	Ptp.7134.1.S1_a_at	DN488452	hypothetical protein	-	1e-13	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.74066.1.S1_at	CN522685	-	-	9e-1	At1g16080	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.41372.1.A1_at	CV283880	-	-	3e+0	At2g21620	RD2	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.225245.1.S1_at	pmrna44455	-	-	2e-10	At1g62350	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.225186.1.S1_at	pmrna44340	tir-nbs-lrr resistance protein	-	3e-2	At3g51560	ATP binding / protein binding / transmembrane receptor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.218782.1.S1_at	pmrna34511	hypothetical protein	-	5e-1	At1g58070	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-1	38	Arabidopsis thaliana	At5g41071	6241290	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.57471.1.S1_at	CA937883	-	-	9e-1	At1g07985	Expressed protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig19610_at	Contig19610	-	-	4e+0	At5g47030	ATP synthase delta' chain, mitochondrial	C.G.	S.X.	Please select
0.04	3e+0	34	Oryza sativa	Os03g0695400	AK070048.1	-	Ankyrin repeat containing protein	7e+0	At4g36240	zinc finger (GATA type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.29064.1.S1_at	CA651167	-	-	1e+0	At4g02425	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620503_at	CD009673	-	-	5e+0	At4g09210	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.4207.2.A1_at	AW324649	hypothetical protein LOC100274836	-	2e+0	At1g06120	fatty acid desaturase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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