Gene omics information

Query gene ID	PtpAffx.30445.2.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.30445.2.S1_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.92745.1.S1_at	CK104111	hypothetical protein	-	4e-22	At1g73670	ATMPK15	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.213932.1.S1_at	pmrna27162	hypothetical protein	-	5e-41	At3g47600	ATMYB94 (MYB DOMAIN PROTEIN 94)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.956.1.A1_at	CV238436	-	-	9e-49	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.219737.1.S1_s_at	pmrna35759	hypothetical protein	-	4e-41	At3g09600	myb family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	805	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-51	202	PtpAffx.30445.1.A1_at	CV277288	hypothetical protein	-	2e-9	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	5e-9	61	PtpAffx.205653.1.S1_at	pmrna11162	hypothetical protein	-	5e-178	At2g42880	ATMPK20	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-8	59	PtpAffx.135584.1.S1_at	CX175152	hypothetical protein	-	7e-137	At2g42880	ATMPK20	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-5	50	PtpAffx.208519.1.S1_at	pmrna16903	hypothetical protein	-	0	At5g19010	MPK16	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	3e-4	46	PtpAffx.51779.1.A1_at	CV233998	hypothetical protein	-	3e-45	At3g14720	ATMPK19	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-3	42	PtpAffx.211563.1.S1_at	pmrna22660	hypothetical protein	-	6e-85	At1g01560	ATMPK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-2	38	PtpAffx.138720.1.A1_at	DN486319	-	-	4e+0	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.77954.2.S1_at	CV249459	hypothetical protein	-	2e-46	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-32	139	Arabidopsis thaliana	At3g18040	821329	MPK9 (MAP KINASE 9)	MAP KINASE 9	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	3e-7	56	Glycine max	GmaAffx.57055.1.S1_at	AW203411	-	-	1e-18	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.08	7e-15	79	Hordeum vulgare	Contig6092_at	Contig6092	-	-	2e-54	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.16	4e-32	139	Oryza sativa	Os05g0576800	AK070644.1	-	MAP kinase homolog	7e-39	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	8e-4	44	Triticum aestivum	Ta.4456.1.S1_at	AJ606017.1	wjumk1 protein	-	8e-59	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.08	1e-9	61	Vitis vinifera	1619722_at	CF213692	hypothetical protein LOC100246022	-	7e-26	At5g19010	MPK16	C.G.	S.X.	Please select
0.12	7e-21	99	Zea mays	Zm.15487.1.S1_at	CD219309	MPK17-1 - putative MAPK	-	2e-51	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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