Gene omics information

Query gene ID PtpAffx.30435.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6688.7PtpAffx.30435.1.A1_atCV276087--5e+0At3g1460060S ribosomal protein L18A (RPL18aC)S.X.H.G.
0.2238.3PtpAffx.208406.1.S1_atpmrna16710hypothetical protein-1e+0At4g02235AGL51S.X.H.G.
0.1729.1PtpAffx.204748.1.S1_atpmrna9344hypothetical protein-2e-1At3g10850GLY2S.X.H.G.
0.1729.1PtpAffx.216665.1.S1_atpmrna31600hypothetical protein-6e+0At5g02280synbindin, putativeS.X.H.G.
0.1729.1PtpAffx.213427.1.S1_atpmrna26255hypothetical protein-2e-38At2g0522040S ribosomal protein S17 (RPS17B)S.X.H.G.
0.1626.9PtpAffx.205991.1.S1_atpmrna11879hypothetical protein-4e-8At1g32583-S.X.H.G.
0.1321.6PtpAffx.32997.1.A1_atCK091660hypothetical protein-3e+0At5g57300UbiE/COQ5 methyltransferase family proteinS.X.H.G.
0.1219.6Ptp.3301.1.S1_atDN485494--2e-3At4g09800RPS18C (S18 RIBOSOMAL PROTEIN)S.X.H.G.
0.1219.6PtpAffx.209926.1.S1_atpmrna19564hypothetical protein-5e-7At1g78680ATGGH2 (gamma-glutamyl hydrolase 2)S.X.H.G.
0.1219.6PtpAffx.114711.1.A1_atCV246923--6e-58At5g03240UBQ3 (POLYUBIQUITIN 3)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.998.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.395.8GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.995.1GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
3.995.1GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.995.1GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
3.193.2GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
2.791.8GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.691.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-446PtpAffx.17721.1.A1_atCV275236--3e-4At3g1460060S ribosomal protein L18A (RPL18aC)C.G.S.X.
0.037e-342PtpAffx.9434.1.S1_atDN493501--2e-6At2g3448060S ribosomal protein L18A (RPL18aB)C.G.S.X.
0.034e-136PtpAffx.225324.1.S1_atpmrna44588--9e-24At4g04210PUX4C.G.S.X.
0.014e-136PtpAffx.201480.1.S1_atpmrna2906hypothetical protein-1e-68At3g44730kinesin motor protein-relatedC.G.S.X.
0.032e+034PtpAffx.51968.1.S1_atCK094952--9e-2At3g1460060S ribosomal protein L18A (RPL18aC)C.G.S.X.
0.022e+034PtpAffx.220976.1.S1_atpmrna37484hypothetical protein-5e-56At1g53440leucine-rich repeat family protein / protein kinase family proteinC.G.S.X.
0.022e+034PtpAffx.220976.1.S1_x_atpmrna37484hypothetical protein-5e-56At1g53440leucine-rich repeat family protein / protein kinase family proteinC.G.S.X.
0.022e+034PtpAffx.214872.1.S1_atpmrna28782hypothetical protein-5e-1At3g22160VQ motif-containing proteinC.G.S.X.
0.027e+032PtpAffx.25124.1.A1_atCV231762hypothetical protein-1e-66At5g657502-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e+032Arabidopsis thalianaAt3g1460082068860S ribosomal protein L18A (RPL18aC)F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFP---C.G.S.X.
0.222e-344Glycine maxHgAffx.17636.1.S1_atCB374789--1e-6At3g1460060S ribosomal protein L18A (RPL18aC)C.G.S.X.
0.201e-550Hordeum vulgareEBro08_SQ004_O17_atEBro08_SQ004_O17--3e-7At3g1460060S ribosomal protein L18A (RPL18aC)C.G.S.X.
0.041e-138Oryza sativaOs01g0752300AK121755.1-60S ribosomal protein L18a-11e-87At2g3448060S ribosomal protein L18A (RPL18aB)C.G.S.X.
0.093e-446Triticum aestivumTaAffx.91894.1.S1_atBJ294717--2e-6At2g3448060S ribosomal protein L18A (RPL18aB)C.G.S.X.
0.036e+030Vitis vinifera1619562_atCA817177--1e+0At2g43030ribosomal protein L3 family proteinC.G.S.X.
0.173e-548Zea maysZm.8692.1.A1_atBM337497--5e-6At3g1460060S ribosomal protein L18A (RPL18aC)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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