Gene omics information

Query gene ID	PtpAffx.30435.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.66	88.7	PtpAffx.30435.1.A1_at	CV276087	-	-	5e+0	At3g14600	60S ribosomal protein L18A (RPL18aC)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.208406.1.S1_at	pmrna16710	hypothetical protein	-	1e+0	At4g02235	AGL51	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.204748.1.S1_at	pmrna9344	hypothetical protein	-	2e-1	At3g10850	GLY2	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.216665.1.S1_at	pmrna31600	hypothetical protein	-	6e+0	At5g02280	synbindin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.213427.1.S1_at	pmrna26255	hypothetical protein	-	2e-38	At2g05220	40S ribosomal protein S17 (RPS17B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.205991.1.S1_at	pmrna11879	hypothetical protein	-	4e-8	At1g32583	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.32997.1.A1_at	CK091660	hypothetical protein	-	3e+0	At5g57300	UbiE/COQ5 methyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.3301.1.S1_at	DN485494	-	-	2e-3	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.209926.1.S1_at	pmrna19564	hypothetical protein	-	5e-7	At1g78680	ATGGH2 (gamma-glutamyl hydrolase 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.114711.1.A1_at	CV246923	-	-	6e-58	At5g03240	UBQ3 (POLYUBIQUITIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	98.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9	95.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-4	46	PtpAffx.17721.1.A1_at	CV275236	-	-	3e-4	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-3	42	PtpAffx.9434.1.S1_at	DN493501	-	-	2e-6	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.225324.1.S1_at	pmrna44588	-	-	9e-24	At4g04210	PUX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.201480.1.S1_at	pmrna2906	hypothetical protein	-	1e-68	At3g44730	kinesin motor protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.51968.1.S1_at	CK094952	-	-	9e-2	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.220976.1.S1_at	pmrna37484	hypothetical protein	-	5e-56	At1g53440	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.220976.1.S1_x_at	pmrna37484	hypothetical protein	-	5e-56	At1g53440	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.214872.1.S1_at	pmrna28782	hypothetical protein	-	5e-1	At3g22160	VQ motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.25124.1.A1_at	CV231762	hypothetical protein	-	1e-66	At5g65750	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g14600	820688	60S ribosomal protein L18A (RPL18aC)	F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-3	44	Glycine max	HgAffx.17636.1.S1_at	CB374789	-	-	1e-6	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.20	1e-5	50	Hordeum vulgare	EBro08_SQ004_O17_at	EBro08_SQ004_O17	-	-	3e-7	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os01g0752300	AK121755.1	-	60S ribosomal protein L18a-1	1e-87	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-4	46	Triticum aestivum	TaAffx.91894.1.S1_at	BJ294717	-	-	2e-6	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619562_at	CA817177	-	-	1e+0	At2g43030	ribosomal protein L3 family protein	C.G.	S.X.	Please select
0.17	3e-5	48	Zea mays	Zm.8692.1.A1_at	BM337497	-	-	5e-6	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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