Gene omics information

Query gene ID PtpAffx.30368.2.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6991.5PtpAffx.30368.2.S1_s_atCX657356hypothetical protein-2e-3At3g51730saposin B domain-containing proteinS.X.H.G.
0.6388.1PtpAffx.7443.1.S1_a_atCV262037hypothetical protein-2e-5At5g64816unknown proteinS.X.H.G.
0.5683.9PtpAffx.204664.1.S1_s_atpmrna9183hypothetical protein-5e-52At1g49670NQRS.X.H.G.
0.5683.9PtpAffx.204664.1.S1_atpmrna9183hypothetical protein-5e-52At1g49670NQRS.X.H.G.
0.5582.2PtpAffx.219689.1.S1_atpmrna35664hypothetical protein-3e-41At5g35560DENN (AEX-3) domain-containing proteinS.X.H.G.
0.5078.6PtpAffx.33375.3.S1_a_atCK090687hypothetical protein-7e-12At1g75980-S.X.H.G.
0.2645.2PtpAffx.41142.2.S1_atCV235220hypothetical protein-2e-3At2g38450-S.X.H.G.
0.2340.5PtpAffx.88561.2.A1_s_atCV264473hypothetical protein-2e+0At1g32370TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)S.X.H.G.
0.1525.3PtpAffx.119791.1.S1_s_atCX656015hypothetical protein-2e-18At1g06900catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingS.X.H.G.
0.1118.1PtpAffx.152594.1.S1_atDN496609--2e+0At5g10970zinc finger (C2H2 type) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.396.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.995.1GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.393.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
3.193.2GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue series
2.992.5GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.992.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.892.1GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
2.791.8GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
2.490.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9801653PtpAffx.30368.2.S1_atCX657356hypothetical protein-2e-3At3g51730saposin B domain-containing proteinC.G.S.X.
0.8501519Ptp.6507.1.S1_atCV264970--2e-3At3g51730saposin B domain-containing proteinC.G.S.X.
0.575e-168591PtpAffx.30368.1.S1_atCV254627hypothetical protein-1e-1At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)C.G.S.X.
0.012e-138PtpAffx.214216.1.S1_atpmrna27661hypothetical protein-3e-8At1g15750TPL (TOPLESS)C.G.S.X.
0.017e-136PtpAffx.209425.1.S1_atpmrna18663hypothetical protein-3e-72At3g54870MRH2 (MORPHOGENESIS OF ROOT HAIR 2)C.G.S.X.
0.013e+034PtpAffx.85677.1.S1_atCV236247white-brown-complex ABC transporter family-3e-24At2g13610ABC transporter family proteinC.G.S.X.
0.023e+034PtpAffx.61241.1.A1_atDN487795hypothetical protein-1e-13At1g21200transcription factorC.G.S.X.
0.023e+034PtpAffx.249.558.A1_atCV276702--2e+0At5g47710C2 domain-containing proteinC.G.S.X.
0.023e+034PtpAffx.249.558.A1_a_atCV276702--2e+0At5g47710C2 domain-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-344Arabidopsis thalianaAt3g51730824336saposin B domain-containing proteinF:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOP---C.G.S.X.
0.037e-136Glycine maxGmaAffx.86419.1.S1_atBG649972--1e+0At2g13770unknown proteinC.G.S.X.
0.024e+032Hordeum vulgareContig17764_atContig17764--4e-10At1g56500haloacid dehalogenase-like hydrolase family proteinC.G.S.X.
0.034e+034Oryza sativaOs01g0166700AK067805.1-Saposin family protein3e+0At3g63160unknown proteinC.G.S.X.
0.038e+032Triticum aestivumTaAffx.27092.1.S1_atCA681350--6e-1At3g02200proteasome family proteinC.G.S.X.
0.056e-444Vitis vinifera1619344_s_atCB968636hypothetical protein LOC100248250-2e+0At3g51730saposin B domain-containing proteinC.G.S.X.
0.028e-134Zea maysZm.9868.1.A1_atBM332331--9e-2At3g32160unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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