Gene omics information

Query gene ID	PtpAffx.30368.2.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	91.5	PtpAffx.30368.2.S1_s_at	CX657356	hypothetical protein	-	2e-3	At3g51730	saposin B domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.7443.1.S1_a_at	CV262037	hypothetical protein	-	2e-5	At5g64816	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.204664.1.S1_s_at	pmrna9183	hypothetical protein	-	5e-52	At1g49670	NQR	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.204664.1.S1_at	pmrna9183	hypothetical protein	-	5e-52	At1g49670	NQR	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.219689.1.S1_at	pmrna35664	hypothetical protein	-	3e-41	At5g35560	DENN (AEX-3) domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.33375.3.S1_a_at	CK090687	hypothetical protein	-	7e-12	At1g75980	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.41142.2.S1_at	CV235220	hypothetical protein	-	2e-3	At2g38450	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.88561.2.A1_s_at	CV264473	hypothetical protein	-	2e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.119791.1.S1_s_at	CX656015	hypothetical protein	-	2e-18	At1g06900	catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.152594.1.S1_at	DN496609	-	-	2e+0	At5g10970	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9	95.1	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1653	PtpAffx.30368.2.S1_at	CX657356	hypothetical protein	-	2e-3	At3g51730	saposin B domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.85	0	1519	Ptp.6507.1.S1_at	CV264970	-	-	2e-3	At3g51730	saposin B domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	5e-168	591	PtpAffx.30368.1.S1_at	CV254627	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.214216.1.S1_at	pmrna27661	hypothetical protein	-	3e-8	At1g15750	TPL (TOPLESS)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.209425.1.S1_at	pmrna18663	hypothetical protein	-	3e-72	At3g54870	MRH2 (MORPHOGENESIS OF ROOT HAIR 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.85677.1.S1_at	CV236247	white-brown-complex ABC transporter family	-	3e-24	At2g13610	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.61241.1.A1_at	DN487795	hypothetical protein	-	1e-13	At1g21200	transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.249.558.A1_at	CV276702	-	-	2e+0	At5g47710	C2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.249.558.A1_a_at	CV276702	-	-	2e+0	At5g47710	C2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At3g51730	824336	saposin B domain-containing protein	F:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.86419.1.S1_at	BG649972	-	-	1e+0	At2g13770	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig17764_at	Contig17764	-	-	4e-10	At1g56500	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	Os01g0166700	AK067805.1	-	Saposin family protein	3e+0	At3g63160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Triticum aestivum	TaAffx.27092.1.S1_at	CA681350	-	-	6e-1	At3g02200	proteasome family protein	C.G.	S.X.	Please select
0.05	6e-4	44	Vitis vinifera	1619344_s_at	CB968636	hypothetical protein LOC100248250	-	2e+0	At3g51730	saposin B domain-containing protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zea mays	Zm.9868.1.A1_at	BM332331	-	-	9e-2	At3g32160	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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