CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.3033.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.3033.1.S1_at CK101033 hypothetical protein - 1e-26 At1g43690 ubiquitin interaction motif-containing protein S.X. H.G.
0.47 74.6 PtpAffx.204145.1.S1_s_at pmrna8170 hypothetical protein - 5e-97 At3g01300 protein kinase, putative S.X. H.G.
0.40 67.0 PtpAffx.201356.1.S1_s_at pmrna2691 hypothetical protein - 8e-9 At3g14750 unknown protein S.X. H.G.
0.30 52.0 PtpAffx.205235.1.S1_at pmrna10377 hypothetical protein - 1e-8 At5g23340 - S.X. H.G.
0.29 50.5 PtpAffx.133206.1.S1_s_at BU875939 hypothetical protein - 4e-19 At1g71080 unknown protein S.X. H.G.
0.27 47.1 Ptp.3821.1.S1_s_at CV245704 hypothetical protein - 7e-9 At3g51610 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-3 44 PtpAffx.209729.1.S1_at pmrna19206 hypothetical protein - 1e-13 At4g21430 B160 C.G. S.X.
0.01 6e-2 40 PtpAffx.202740.1.S1_at pmrna5471 hypothetical protein - 1e-5 At5g46040 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 6e-2 40 PtpAffx.200322.1.S1_at pmrna641 hypothetical protein - 6e-1 At5g50915 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.213931.1.S1_at pmrna27161 hypothetical protein - 6e-11 At5g39785 structural constituent of ribosome C.G. S.X.
0.01 2e-1 38 PtpAffx.207443.1.S1_at pmrna14782 hypothetical protein - 2e-4 At5g67570 DG1 (DELAYED GREENING 1) C.G. S.X.
0.01 1e+0 36 PtpAffx.218292.1.S1_s_at pmrna33851 hypothetical protein - 8e-2 At1g20132 hydrolase, acting on ester bonds / lipase C.G. S.X.
0.01 1e+0 36 PtpAffx.11742.1.A1_at CV254453 hypothetical protein - 1e-17 At5g25160 ZFP3 (ZINC FINGER PROTEIN 3) C.G. S.X.
0.02 4e+0 34 PtpAffx.4395.4.A1_at CX182030 hypothetical protein - 2e-5 At2g43970 La domain-containing protein C.G. S.X.
0.02 4e+0 34 PtpAffx.21447.2.A1_a_at CK095748 hypothetical protein - 4e-1 At3g46540 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-26 121 Arabidopsis thaliana At1g43690 840956 ubiquitin interaction motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP - - - C.G. S.X.
0.12 5e-24 113 Glycine max GmaAffx.69794.1.S1_at BU091011 - - 1e-11 At1g43690 ubiquitin interaction motif-containing protein C.G. S.X.
0.02 6e-3 42 Hordeum vulgare Contig5897_at Contig5897 - - 6e-1 At5g27810 sequence-specific DNA binding / transcription factor C.G. S.X.
0.04 9e-5 50 Oryza sativa Os04g0421800 AK068951.1 - EF-Hand-like domain containing protein 3e-3 At1g43690 ubiquitin interaction motif-containing protein C.G. S.X.
0.03 7e-1 36 Triticum aestivum Ta.21273.1.S1_s_at CA615208 - - 4e-1 At2g42460 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1608595_at CF413802 - - 1e+0 At4g04580 myb family transcription factor C.G. S.X.
0.02 1e+0 34 Zea mays Zm.3817.1.S1_at BG841104 - - 1e-6 At5g63970 copine-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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