CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.30151.2.S1_a_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 74.6 PtpAffx.30151.2.S1_a_at CV248301 - - 2e-1 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) S.X. H.G.
0.44 71.9 PtpAffx.67687.1.S1_at DN497463 - - 5e-2 At2g22040 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.44 71.9 PtpAffx.1578.2.S1_at BP932535 hypothetical protein - 5e+0 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) S.X. H.G.
0.44 71.9 PtpAffx.221642.1.S1_at pmrna38626 hypothetical protein - 1e+0 At3g18990 VRN1 (REDUCED VERNALIZATION RESPONSE 1) S.X. H.G.
0.31 53.7 PtpAffx.212310.1.S1_at pmrna24137 hypothetical protein - 1e+0 At3g04220 disease resistance protein (TIR-NBS-LRR class), putative S.X. H.G.
0.07 11.6 PtpAffx.217068.1.S1_at pmrna32203 hypothetical protein - 3e-1 At3g19950 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 98.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 781 PtpAffx.30151.2.S1_at CV248301 - - 2e-1 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) C.G. S.X.
0.02 3e-1 36 PtpAffx.211519.1.S1_at pmrna22570 hypothetical protein - 4e-76 At1g73690 CDKD1 C.G. S.X.
0.03 1e+0 34 PtpAffx.80599.1.A1_at BP934096 hypothetical protein - 2e-15 At2g42070 ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23) C.G. S.X.
0.03 1e+0 34 PtpAffx.80113.1.S1_s_at BU811053 hypothetical protein - 1e+0 At3g23870 permease-related C.G. S.X.
0.03 1e+0 34 PtpAffx.2413.1.S1_a_at BU813296 - - 8e-24 At1g31870 unknown protein C.G. S.X.
0.03 1e+0 34 PtpAffx.209764.1.S1_at pmrna19261 hypothetical protein - 3e-2 At4g13760 polygalacturonase C.G. S.X.
0.02 1e+0 34 PtpAffx.204585.1.S1_at pmrna9006 hypothetical protein - 2e-45 At2g21340 antiporter/ drug transporter C.G. S.X.
0.01 1e+0 34 PtpAffx.203331.1.S1_at pmrna6625 hypothetical protein - 2e-6 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.04 1e+0 34 Ptp.758.1.S1_at CK088749 hypothetical protein - 1e+0 At3g02640 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At1g27450 839636 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. - - - C.G. S.X.
0.04 4e+0 32 Glycine max GmaAffx.81815.1.S1_at BG510416 - - 3e-3 At3g49115 unknown protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare Contig18381_at Contig18381 - - 7e-1 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.03 2e+0 34 Oryza sativa Os.26594.1.A1_at - - - 0 C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.70061.10.S1_at AJ615900 - - 3e+0 At5g67390 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1620087_at CF414944 hypothetical protein LOC100250448 - 4e+0 At5g48860 unknown protein C.G. S.X.
0.03 5e+0 30 Zea mays Zm.9909.1.A1_at BM332451 - - 4e+0 At5g15725 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage