CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.30128.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.30128.1.S1_at CV244941 hypothetical protein - 3e+0 At2g23910 cinnamoyl-CoA reductase-related S.X. H.G.
0.67 91.1 PtpAffx.69725.1.S1_a_at DN494612 hypothetical protein - 1e+0 At2g41130 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.57 84.2 PtpAffx.2103.1.A1_s_at CV246207 hypothetical protein - 3e-8 At4g35320 unknown protein S.X. H.G.
0.53 80.5 PtpAffx.206254.1.S1_at pmrna12413 hypothetical protein - 1e-1 At2g07280 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.219602.1.S1_s_at pmrna35561 hypothetical protein - 6e-5 At5g39390 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.38 63.7 PtpAffx.210959.1.S1_x_at pmrna21534 hypothetical protein - 8e-23 At1g54570 esterase/lipase/thioesterase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.9 99.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
15.9 99.6 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
9.9 98.9 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.9 98.0 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0 97.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-10 67 Ptp.5216.1.S1_at CV243557 hypothetical protein - 9e+0 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) C.G. S.X.
0.03 6e-2 40 PtpAffx.161181.1.S1_at CN549994 hypothetical protein - 3e-1 At2g23910 cinnamoyl-CoA reductase-related C.G. S.X.
0.02 2e-1 38 PtpAffx.211169.1.S1_at pmrna21958 hypothetical protein - 2e-9 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family C.G. S.X.
0.02 9e-1 36 PtpAffx.219091.1.S1_at pmrna34908 hypothetical protein - 1e-38 At5g51070 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) C.G. S.X.
0.01 9e-1 36 PtpAffx.203143.1.S1_at pmrna6228 hypothetical protein - 1e-56 At1g17760 CSTF77 C.G. S.X.
0.02 4e+0 34 PtpAffx.45853.1.S1_at CK091518 hypothetical protein - 2e-24 At5g25530 DNAJ heat shock protein, putative C.G. S.X.
0.01 4e+0 34 PtpAffx.22096.1.S1_at CK102930 hypothetical protein - 3e-24 At4g33410 signal peptide peptidase family protein C.G. S.X.
0.02 4e+0 34 PtpAffx.21476.1.S1_at DN497119 hypothetical protein - 6e-2 At2g22570 NIC1 (NICOTINAMIDASE 1) C.G. S.X.
0.02 4e+0 34 PtpAffx.213459.1.S1_at pmrna26315 hypothetical protein - 9e-6 At2g37380 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Arabidopsis thaliana At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM - - - C.G. S.X.
0.21 7e-20 99 Glycine max GmaAffx.91013.1.S1_at CF806738 - - 5e+0 At5g51105 unknown protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HS06O01u_at HS06O01u - - 7e-1 At1g20100 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os01g0384500 9629.m02758 - - 2e+0 At5g65180 - C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.119541.1.S1_at BJ268864 - - 1e+0 At4g06536 - C.G. S.X.
0.07 1e-8 59 Vitis vinifera 1619065_at CB972322 hypothetical protein LOC100253987 - 1e-2 At4g30470 cinnamoyl-CoA reductase-related C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.254.1.A1_at AI670289 - - 3e+0 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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