Gene omics information

Query gene ID	PtpAffx.29726.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.29726.1.A1_s_at	CV249620	hypothetical protein	-	1e-28	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.163121.1.S1_at	BU873063	hypothetical protein	-	7e-6	At2g36190	AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.208626.1.S1_at	pmrna17122	lysine/histidine transporter	-	5e-20	At5g40780	LHT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.200575.1.S1_at	pmrna1145	hypothetical protein	-	2e-1	At3g60730	pectinesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.225734.1.S1_s_at	pmrna45303	hypothetical protein	-	3e-1	At5g61680	pectinesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.213910.1.S1_at	pmrna27123	hypothetical protein	-	3e-12	At3g01270	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.0	99.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
17.7	99.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
16.0	99.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
12.9	99.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
11.6	99.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
10.6	99.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	1160	PtpAffx.207886.1.S1_at	pmrna15657	hypothetical protein	-	6e-26	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-19	97	PtpAffx.131888.1.S1_s_at	BU831354	hypothetical protein	-	9e-2	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	5e-4	46	PtpAffx.125836.1.A1_at	BP934176	hypothetical protein	-	3e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.73921.1.A1_at	DN491182	hypothetical protein	-	6e-18	At5g06180	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-1	36	PtpAffx.11720.1.S1_at	CV256791	hypothetical protein	-	1e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.42186.1.A1_at	BP936012	-	-	3e-3	At4g32480	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.41255.2.S1_at	CK091345	hypothetical protein	-	1e-5	At2g01100	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224665.1.S1_at	pmrna43430	hypothetical protein	-	7e-2	At1g20160	ATSBT5.2	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.220904.1.S1_at	pmrna37379	hypothetical protein	-	4e+0	At5g57625	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-28	127	Arabidopsis thaliana	At1g13890	837948	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	8e-6	52	Glycine max	Gma.2055.1.S1_s_at	AW348801	-	-	5e-6	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HR01N23u_at	HR01N23u	-	-	3e+0	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os03g0212400	AK064327.1	-	SNAP25 homologous protein SNAP33 (AtSNAP33)(Synaptosomal-associated protein SNAP25-like 1) (SNAP-25like protein 1) (Snap25a)	3e-3	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	Ta.776.1.A1_at	BG907471	-	-	3e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.11	4e-4	44	Vitis vinifera	1613679_at	BQ798757	-	-	7e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please select
0.08	6e-4	44	Zea mays	Zm.9079.1.A1_at	CN844993	hypothetical protein LOC100217287	-	6e-3	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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