CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.29632.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.29632.1.S1_at CX654220 - - 2e-3 At3g18080 BGLU44 (B-S GLUCOSIDASE 44) S.X. H.G.
0.80 96.0 PtpAffx.221266.1.S1_at pmrna38026 hypothetical protein - 2e+0 At4g18510 CLE2 (CLAVATA3/ESR-RELATED) S.X. H.G.
0.61 87.0 PtpAffx.28103.1.S1_at CV230387 hypothetical protein - 4e-1 At4g39250 ATRL1 (ARABIDOPSIS RAD-LIKE 1) S.X. H.G.
0.60 86.0 PtpAffx.62585.1.A1_at CV273954 - - 5e-3 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) S.X. H.G.
0.43 69.7 PtpAffx.208712.1.S1_at pmrna17276 high affinity inorganic phosphate transporter - 2e-11 At5g43350 PHT1 S.X. H.G.
0.19 32.7 Ptp.7170.1.S1_s_at DN497999 hypothetical protein - 1e+0 At1g69760 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.3 100.0 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
22.4 99.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.8 99.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.2 79.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.3 55.0 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 9e-10 65 PtpAffx.34388.1.A1_at BP932598 hypothetical protein - 1e+0 At5g42965 nucleic acid binding / ribonuclease H C.G. S.X.
0.03 9e-10 65 Ptp.5965.1.S1_s_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.03 9e-10 65 Ptp.5965.1.S1_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.04 1e-5 52 PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) C.G. S.X.
0.03 8e-4 46 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.03 8e-4 46 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.04 8e-4 46 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 C.G. S.X.
0.03 3e-3 44 PtpAffx.204078.1.S1_s_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.03 3e-3 44 PtpAffx.204078.1.S1_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At3g18080 821333 BGLU44 (B-S GLUCOSIDASE 44) F:in 6 functions;P:carbohydrate metabolic process;C:cytosolic ribosome, cell wall, plant-type cell wall;BOPMFA - - - C.G. S.X.
0.05 5e-2 40 Glycine max Gma.16515.2.S1_a_at BU551231 - - 5e-1 At1g63057 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig17422_at Contig17422 - - 2e-6 At5g58440 SNX2a (SORTING NEXIN 2a) C.G. S.X.
0.03 3e-1 38 Oryza sativa Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.78637.1.S1_at CA729778 - - 4e+0 At4g20325 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1620679_at CB972076 hypothetical protein LOC100255914 - 2e-16 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.03 1e+0 34 Zea mays Zm.10219.2.A1_at M95067.1 hypothetical LOC542286 - 1e-7 At1g25155 anthranilate synthase beta subunit, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage