CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.29085.1.A1_s_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.29085.1.A1_s_at DN489411 - - 4e+0 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) S.X. H.G.
0.77 94.9 PtpAffx.216790.1.S1_s_at pmrna31796 hypothetical protein - 9e-1 At5g47470 nodulin MtN21 family protein S.X. H.G.
0.75 94.1 Ptp.7099.1.S1_s_at BU810141 hypothetical protein - 4e+0 At5g40430 MYB22 (myb domain protein 22) S.X. H.G.
0.67 91.1 PtpAffx.87978.1.S1_s_at CX170242 leucine-rich repeat protein kinase - 1e-38 At5g62230 ERL1 (ERECTA-LIKE 1) S.X. H.G.
0.63 88.1 PtpAffx.64701.1.S1_x_at CV236236 histone 2 - 3e-45 At2g38810 HTA8 (HISTONE H2A 8) S.X. H.G.
0.53 80.5 PtpAffx.64701.2.S1_at CX184746 histone 2 - 6e-12 At3g54560 HTA11 S.X. H.G.
0.44 71.9 PtpAffx.202524.1.S1_s_at pmrna5051 hypothetical protein - 6e-1 At1g13700 glucosamine/galactosamine-6-phosphate isomerase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.3 100.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.0 76.2 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.0 76.2 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.9 74.2 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-30 131 PtpAffx.1400.1.S1_at CV226325 hypothetical protein - 9e-25 At1g34270 exostosin family protein C.G. S.X.
0.03 3e-1 34 PtpAffx.155350.1.S1_s_at CV282972 hypothetical protein - 6e-7 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.03 3e-1 34 PtpAffx.155350.1.S1_at CV282972 hypothetical protein - 6e-7 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.01 1e+0 32 PtpAffx.212799.1.S1_at pmrna25048 hypothetical protein - 5e-40 At5g40390 SIP1 (seed imbibition 1-like) C.G. S.X.
0.05 1e+0 32 PtpAffx.110427.2.S1_a_at CV261822 hypothetical protein - 9e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 5e+0 30 PtpAffx.73510.1.S1_s_at AJ778058 hypothetical protein - 2e-27 At5g61970 signal recognition particle-related / SRP-related C.G. S.X.
0.06 5e+0 30 PtpAffx.6537.2.A1_a_at CV226718 hypothetical protein - 3e+0 At1g23440 pyrrolidone-carboxylate peptidase family protein C.G. S.X.
0.06 5e+0 30 PtpAffx.30912.1.A1_at CV256664 - - 1e+1 At5g46013 unknown protein C.G. S.X.
0.04 5e+0 30 PtpAffx.31318.1.A1_at CV240328 AP2/ERF domain-containing transcription factor - 3e-2 At5g05113 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e+0 30 Arabidopsis thaliana At1g75700 843904 HVA22G (HVA22-LIKE PROTEIN G) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.06 1e+0 32 Glycine max GmaAffx.38457.1.S1_at CA938721 - - 2e-1 At5g36240 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.06 2e+0 30 Hordeum vulgare HVSMEl0006J08r2_s_at HVSMEl0006J08r2 - - 3e+0 At5g38220 hydrolase C.G. S.X.
0.05 2e+0 32 Oryza sativa Os01g0747700 AK101311.1 - RNA-binding S4 domain containing protein 5e-14 At1g53120 RNA-binding S4 domain-containing protein C.G. S.X.
0.08 4e+0 30 Triticum aestivum TaAffx.112440.1.S1_at CA621396 - - 4e-1 At3g11050 ATFER2 (ferritin 2) C.G. S.X.
0.06 1e+0 30 Vitis vinifera 1621360_at CF206121.1 - - 3e+0 At2g02740 WHY3 (WHIRLY 3) C.G. S.X.
0.06 2e+0 30 Zea mays ZmAffx.1090.1.A1_at AW065404 - - 1e+1 At3g57958 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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