CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.29056.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 96.3 PtpAffx.29056.1.S1_at DN500805 hypothetical protein - 6e-6 At5g12010 unknown protein S.X. H.G.
0.23 40.5 Ptp.7021.1.S1_s_at CV273623 hypothetical protein - 7e-18 At3g57785 unknown protein S.X. H.G.
0.19 32.7 PtpAffx.129776.1.S1_at BU823997 - - 3e-1 At4g28703 - S.X. H.G.
0.11 18.1 PtpAffx.53149.1.S1_at DN484302 hypothetical protein - 8e-16 At1g04960 - S.X. H.G.
0.10 16.3 PtpAffx.211958.1.S1_at pmrna23479 hypothetical protein - 3e+0 At4g35580 NTL9 (NAC transcription factor-like 9) S.X. H.G.
0.10 16.3 PtpAffx.23537.1.S1_at CF234126 hypothetical protein - 2e-41 At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative S.X. H.G.
0.08 12.9 PtpAffx.17902.1.A1_at CV229372 hypothetical protein - 1e-16 At1g29690 CAD1 (constitutively activated cell death 1) S.X. H.G.
0.06 9.8 PtpAffx.119564.1.S1_at CX656976 hypothetical protein - 1e-1 At5g05180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 97.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.1 97.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 0 759 PtpAffx.206660.1.S1_at pmrna13221 hypothetical protein - 2e-23 At5g12010 unknown protein C.G. S.X.
0.25 2e-24 113 PtpAffx.119343.2.A1_a_at BP936124 hypothetical protein - 4e-6 At4g29780 unknown protein C.G. S.X.
0.28 8e-9 61 PtpAffx.119343.1.A1_a_at BP933189 hypothetical protein - 4e-10 At5g12010 unknown protein C.G. S.X.
0.04 1e-1 38 PtpAffx.202802.1.S1_at pmrna5557 hypothetical protein - 2e-1 At5g27980 seed maturation family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.91803.1.S1_at DN500898 hypothetical protein - 2e-18 At4g36195 serine carboxypeptidase S28 family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.204374.1.S1_at pmrna8595 hypothetical protein - 4e-16 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.04 2e+0 34 PtpAffx.94379.1.S1_at CX173149 hypothetical protein - 6e-2 At1g10480 ZFP5 (ZINC FINGER PROTEIN 5) C.G. S.X.
0.02 2e+0 34 PtpAffx.4820.1.A1_s_at CV130747 hypothetical protein - 1e-4 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) C.G. S.X.
0.03 2e+0 34 PtpAffx.46537.1.S1_at DN493147 hypothetical protein - 1e-7 At5g17570 tatD-related deoxyribonuclease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-6 52 Arabidopsis thaliana At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO - - - C.G. S.X.
0.28 5e-38 159 Glycine max GmaAffx.15586.1.S1_at BG839271 - - 7e-6 At5g12010 unknown protein C.G. S.X.
0.09 2e-10 65 Hordeum vulgare Contig4976_at Contig4976 - - 4e+0 At5g12010 unknown protein C.G. S.X.
0.07 2e-4 48 Oryza sativa Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein C.G. S.X.
0.08 6e-3 42 Triticum aestivum Ta.7143.3.S1_a_at CA730168 - - 4e+0 At1g11700 unknown protein C.G. S.X.
0.22 3e-14 77 Vitis vinifera 1619478_at CD004753 hypothetical protein LOC100247440 - 3e-9 At5g12010 unknown protein C.G. S.X.
0.12 9e-3 40 Zea mays Zm.11770.1.A1_at BM380607 hypothetical protein LOC100191551 - 9e-5 At5g12010 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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