Gene omics information

Query gene ID	PtpAffx.28903.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.28903.1.S1_at	DN496627	hypothetical protein	-	2e-1	At5g20110	dynein light chain, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.2929.1.S1_at	BU835620	hypothetical protein	-	8e+0	At5g44580	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.44303.2.A1_a_at	CA930623	hypothetical protein	-	2e-9	At1g04520	PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.6498.2.S1_at	AI162148	hypothetical protein	-	1e+0	At5g36280	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.5105.1.S1_s_at	CV242023	hypothetical protein	-	2e-10	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.7671.1.A1_at	DN498614	hypothetical protein	-	1e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.3207.1.S1_at	CK093422	hypothetical protein	-	7e-13	At2g35680	dual specificity protein phosphatase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.6972.1.S1_at	DN498652	ferroportin protein family	-	1e-3	At5g03570	ATIREG2 (IRON-REGULATED PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.7	98.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.7	97.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	PtpAffx.212465.1.S1_at	pmrna24423	hypothetical protein	-	2e+0	At5g35945	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.211370.1.S1_at	pmrna22288	hypothetical protein	-	9e-2	At3g11640	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	36	PtpAffx.214184.1.S1_at	pmrna27591	hypothetical protein	-	7e-30	At2g25600	SPIK (Shaker Pollen Inward K+ channel)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.224694.1.S1_at	pmrna43498	hypothetical protein	-	4e-6	At4g11530	kinase	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.219179.1.S1_s_at	pmrna35026	hypothetical protein	-	9e-9	At3g49170	EMB2261 (embryo defective 2261)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.212618.1.S1_at	pmrna24702	hypothetical protein	-	2e-17	At3g49170	EMB2261 (embryo defective 2261)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.207899.1.S1_at	pmrna15678	magnesium transporter	-	2e-11	At2g03620	magnesium transporter CorA-like family protein (MRS2-5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.201198.1.S1_at	pmrna2371	-	-	1e-8	At1g49960	xanthine/uracil permease family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.136512.1.S1_at	CF230821	hypothetical protein	-	2e-9	At1g79720	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At5g20110	832133	dynein light chain, putative	F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.10903.1.S1_at	CA802066	-	-	5e-1	At4g32717	SCRL24 (SCR-Like 24)	C.G.	S.X.	Please select
0.03	7e+0	30	Hordeum vulgare	Contig24203_at	Contig24203	-	-	1e+1	At5g27090	AGL54	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os10g0565000	AA752408	-	-	1e-17	At2g35170	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.51009.1.S1_at	CA732150	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.06	3e-1	34	Vitis vinifera	1617209_at	CB980244	-	-	7e-1	At1g71330	ATNAP5	C.G.	S.X.	Please select
0.02	4e-1	34	Zea mays	Zm.5200.1.A1_at	AY108333.1	-	-	5e-1	At1g63900	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage