CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.283.14.A1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.283.14.A1_x_at CV272972 hypothetical protein - 2e-34 At5g20830 SUS1 (SUCROSE SYNTHASE 1) S.X. H.G.
0.91 99.2 PtpAffx.283.1.A1_x_at CV226943 hypothetical protein - 5e-96 At5g20830 SUS1 (SUCROSE SYNTHASE 1) S.X. H.G.
0.80 96.0 Ptp.3758.1.S1_at CV251606 hypothetical protein - 2e-11 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) S.X. H.G.
0.77 94.9 Ptp.1701.1.S1_s_at CK093047 glycosyltransferase, CAZy family GT8 - 1e-8 At3g50760 GATL2 (Galacturonosyltransferase-like 2) S.X. H.G.
0.61 87.0 Ptp.2441.1.S1_x_at CV225767 hypothetical protein - 2e-38 At3g59480 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.60 86.0 Ptp.5810.1.S1_s_at CF232478 hypothetical protein - 7e-37 At1g23480 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.6 99.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
14.2 99.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.0 99.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 0 1067 PtpAffx.283.1.A1_x_at CV226943 hypothetical protein - 5e-96 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.60 5e-180 630 PtpAffx.283.4.A1_x_at CF229236 - - 6e-3 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.51 1e-137 490 PtpAffx.283.2.A1_x_at CV227694 - - 5e-3 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.56 2e-121 436 PtpAffx.283.5.A1_x_at CV270031 - - 9e-1 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.06 5e-20 99 PtpAffx.133784.1.A1_at CV262602 hypothetical protein - 6e+0 Atcg00650 - C.G. S.X.
0.10 7e-19 95 PtpAffx.283.16.S1_s_at CV226238 hypothetical protein - 6e-65 At5g25265 unknown protein C.G. S.X.
0.10 7e-19 95 PtpAffx.283.16.S1_at CV226238 - - 6e-65 At5g25265 unknown protein C.G. S.X.
0.09 7e-19 95 Ptp.1552.1.S1_x_at DN487944 hypothetical protein - 9e-29 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
0.09 7e-19 95 Ptp.1552.1.S1_s_at DN487944 hypothetical protein - 9e-29 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-34 147 Arabidopsis thaliana At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). - - - C.G. S.X.
0.46 2e-71 270 Glycine max GmaAffx.92464.1.S1_s_at CF807674 - - 4e-66 At3g43190 SUS4 C.G. S.X.
0.22 1e-18 93 Hordeum vulgare Contig861_at Contig861 - - 3e-8 At3g43190 SUS4 C.G. S.X.
0.20 2e-7 57 Oryza sativa Os03g0401300 AK061713.1 - Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 2) 6e-26 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.31 8e-15 81 Triticum aestivum Ta.26559.1.A1_at CD491209 - - 2e-6 At3g43190 SUS4 C.G. S.X.
0.28 1e-72 272 Vitis vinifera 1619223_s_at CB005867 hypothetical protein LOC100249279 - 3e-41 At3g43190 SUS4 C.G. S.X.
0.07 5e-5 48 Zea mays Zm.6977.1.S1_at X02400.1 sucrose synthase - 8e-27 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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