Gene omics information

Query gene ID	PtpAffx.283.1.A1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.283.1.A1_x_at	CV226943	hypothetical protein	-	5e-96	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.283.14.A1_x_at	CV272972	hypothetical protein	-	2e-34	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.3758.1.S1_at	CV251606	hypothetical protein	-	2e-11	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.1701.1.S1_s_at	CK093047	glycosyltransferase, CAZy family GT8	-	1e-8	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.2441.1.S1_x_at	CV225767	hypothetical protein	-	2e-38	At3g59480	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.5810.1.S1_s_at	CF232478	hypothetical protein	-	7e-37	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
15.5	99.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
12.3	99.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	0	1067	PtpAffx.283.14.A1_x_at	CV272972	hypothetical protein	-	2e-34	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	0	718	PtpAffx.283.4.A1_x_at	CF229236	-	-	6e-3	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	3e-169	597	PtpAffx.283.2.A1_x_at	CV227694	-	-	5e-3	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-155	551	PtpAffx.283.5.A1_x_at	CV270031	-	-	9e-1	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	5e-32	141	PtpAffx.23657.1.S1_s_at	BP928698	hypothetical protein	-	6e-42	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-23	113	PtpAffx.208465.1.S1_at	pmrna16817	hypothetical protein	-	6e-38	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-20	101	PtpAffx.283.16.S1_s_at	CV226238	hypothetical protein	-	6e-65	At5g25265	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-20	101	PtpAffx.283.16.S1_at	CV226238	-	-	6e-65	At5g25265	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-19	99	Ptp.1552.1.S1_x_at	DN487944	hypothetical protein	-	9e-29	At4g02280	SUS3 (sucrose synthase 3)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	5e-96	353	Arabidopsis thaliana	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	4e-122	440	Glycine max	Gma.1828.1.S1_at	AF030231.1	sucrose synthase	-	3e-60	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.26	2e-32	141	Hordeum vulgare	Contig460_s_at	Contig460	sucrose synthase	-	6e-12	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.25	3e-46	188	Oryza sativa	Os06g0194900	AK119193.1	-	Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 1)	3e-60	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	8e-24	113	Triticum aestivum	Ta.92.1.S1_s_at	CD869165	sucrose synthase type I	-	1e-22	At3g43190	SUS4	C.G.	S.X.	Please select
0.52	4e-180	630	Vitis vinifera	1619223_s_at	CB005867	hypothetical protein LOC100249279	-	3e-41	At3g43190	SUS4	C.G.	S.X.	Please select
0.20	3e-18	93	Zea mays	Zm.3550.1.A1_at	CF624216	sucrose synthase1	-	8e-12	At3g43190	SUS4	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage