Gene omics information

Query gene ID	PtpAffx.27445.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.5733.1.S1_s_at	AJ777863	hypothetical protein	-	0	Atmg01190	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.8000.1.S1_at	DN484105	hypothetical protein	-	0	Atmg01190	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.2351.1.S1_s_at	CF936500	hypothetical protein	-	2e-6	At4g30010	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	Ptp.5082.1.S1_s_at	CX654214	hypothetical protein	-	8e-41	At3g52880	monodehydroascorbate reductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-15	83	PtpAffx.123091.1.S1_at	CK092171	hypothetical protein	-	5e-7	At4g01000	ubiquitin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.207548.1.S1_at	pmrna14981	hypothetical protein	-	2e-2	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.2791.4.S1_at	CV263094	hypothetical protein	-	4e-66	At2g17360	40S ribosomal protein S4 (RPS4A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.254.1.S1_s_at	CV268035	hypothetical protein	-	1e-20	At2g47115	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.225670.1.S1_at	pmrna45186	hypothetical protein	-	7e-11	At3g51290	proline-rich family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.219413.1.S1_x_at	pmrna35334	-	-	2e-1	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.219489.1.S1_at	pmrna35427	hypothetical protein	-	5e+0	At1g08880	H2AXA	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.219413.1.S1_at	pmrna35334	-	-	2e-1	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.216607.1.S1_at	pmrna31507	hypothetical protein	-	3e+1	At5g26270	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At3g10300	820192	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.64275.1.A1_at	BI969811	-	-	3e+0	At5g37610	voltage-gated anion channel	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig17208_at	Contig17208	-	-	1e-4	At1g52360	coatomer protein complex, subunit beta 2 (beta prime), putative	C.G.	S.X.	Please select
0.07	6e+0	32	Oryza sativa	Os05g0571501	9633.m04662	-	-	7e-1	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Triticum aestivum	TaAffx.38831.1.S1_at	BJ243695	-	-	4e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1615302_at	CF414670	-	-	7e-1	At3g44716	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.18070.1.A1_s_at	AI691671	-	-	4e+0	At5g25000	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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