Gene omics information

Query gene ID PtpAffx.27285.1.A1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8096.0PtpAffx.27285.1.A1_s_atCA923948hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.4067.0PtpAffx.103568.1.S1_s_atCK100963hypothetical protein-6e-9At5g42480ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)S.X.H.G.
0.3863.7Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-S.X.H.G.
0.3559.7PtpAffx.216450.1.S1_atpmrna31230hypothetical protein-2e-4Atcg00500-S.X.H.G.
0.1423.5PtpAffx.209465.1.S1_atpmrna18772metal tolerance protein-1e-41At1g51610cation efflux family protein / metal tolerance protein, putative (MTPc4)S.X.H.G.
0.0914.6Ptp.4446.2.A1_s_atCV232502hypothetical protein-2e-167At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.797.9GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.196.8GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.696.2GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.694.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.193.2GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.092.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.092.9GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
2.691.3GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
2.289.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.289.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7801350PtpAffx.200191.1.S1_atpmrna358hypothetical protein-8e-56At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.275e-66252PtpAffx.108312.1.A1_s_atCV245159hypothetical protein-2e-9At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.142e-31137PtpAffx.82244.1.A1_atCV254725hypothetical protein-1e+1At5g53045-C.G.S.X.
0.032e-138PtpAffx.39700.1.S1_atCF229096--3e+0At1g63970ISPFC.G.S.X.
0.022e+034PtpAffx.4797.1.A1_atCV274416--2e+0At3g17580unknown proteinC.G.S.X.
0.012e+034PtpAffx.216651.1.S1_atpmrna31578hypothetical protein-5e-5At1g05590HEXO2 (BETA-HEXOSAMINIDASE 2)C.G.S.X.
0.022e+034PtpAffx.216649.1.S1_s_atpmrna31575hypothetical protein-2e-7At1g05590HEXO2 (BETA-HEXOSAMINIDASE 2)C.G.S.X.
0.012e+034PtpAffx.209164.1.S1_atpmrna18141hypothetical protein-3e-6At1g14190glucose-methanol-choline (GMC) oxidoreductase family proteinC.G.S.X.
0.022e+034PtpAffx.204996.1.S1_atpmrna9890hypothetical protein-5e+0At4g11745kelch repeat-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.399e-58224Arabidopsis thalianaAt1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase---C.G.S.X.
0.523e-86319Glycine maxGma.8679.1.S1_atBE659500--7e-68At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.232e-35149Hordeum vulgareContig13183_s_atContig13183--3e-37At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.232e-29131Oryza sativaOs08g0176800AK111670.1-contains InterPro domain(s): IPR001680, IPR0110466e-45At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.192e-24113Triticum aestivumTa.2928.1.S1_atBJ306562--1e-18At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.231e-32139Vitis vinifera1621518_atCF414303hypothetical protein LOC100250245-2e-23At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.192e-35149Zea maysZm.6953.1.A1_atAY106512.1rae1-like protein-4e-52At1g80670transducin family protein / WD-40 repeat family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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