Gene omics information

Query gene ID	PtpAffx.27171.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.4212.1.S1_a_at	DN502730	-	-	9e-2	At3g10820	DNA binding / protein binding / transcription regulator	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.131988.1.S1_s_at	CX179599	hypothetical protein	-	2e+0	At1g22470	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.215528.1.S1_s_at	pmrna29780	hypothetical protein	-	3e-52	At1g28420	HB-1 (homeobox-1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.203861.1.S1_at	pmrna7626	hypothetical protein	-	7e-67	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.8135.2.S1_at	DN503783	-	-	2e-7	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	95.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-5	50	PtpAffx.62753.1.A1_at	CV267527	hypothetical protein	-	2e-78	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	7e-5	50	PtpAffx.45054.1.S1_at	CV275564	hypothetical protein	-	8e-18	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-5	50	Ptp.7870.2.S1_s_at	DN499526	hypothetical protein	-	1e-53	At1g65430	zinc finger protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-5	50	Ptp.7870.2.S1_at	DN499526	hypothetical protein	-	1e-53	At1g65430	zinc finger protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	1e-3	46	PtpAffx.131450.1.S1_at	CK103111	hypothetical protein	-	1e-32	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	42	PtpAffx.64585.1.A1_at	CV242131	hypothetical protein	-	3e-37	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	38	PtpAffx.202087.1.S1_at	pmrna4159	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.224572.1.S1_at	pmrna43225	hypothetical protein	-	3e-6	At4g37050	PLP4 (PATATIN-LIKE PROTEIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.208521.1.S1_at	pmrna16905	hypothetical protein	-	3e-1	At4g20280	TAF11 (TBP-ASSOCIATED FACTOR 11)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-5	50	Arabidopsis thaliana	At2g31510	817709	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	7e-5	50	Glycine max	GmaAffx.4816.2.A1_at	BI893602	-	-	2e-20	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please select
0.03	2e-2	40	Hordeum vulgare	Contig9899_at	Contig9899	-	-	4e-1	At1g65430	zinc finger protein-related	C.G.	S.X.	Please select
0.05	6e-6	54	Oryza sativa	Os04g0492100	AK060196.1	-	ARIADNE-like protein	2e-45	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Triticum aestivum	Ta.7255.1.S1_at	CD452491	-	-	2e-27	At1g65430	zinc finger protein-related	C.G.	S.X.	Please select
0.03	4e+0	32	Vitis vinifera	1621377_at	CB340584	hypothetical protein LOC100257000	-	2e-6	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.15804.1.S1_at	CA405323	-	-	9e-22	At1g65430	zinc finger protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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