Gene omics information

Query gene ID	PtpAffx.26613.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.38	63.7	PtpAffx.26613.1.S1_at	CX175693	hypothetical protein	-	9e-52	At4g18480	CHLI1	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	Ptp.4956.1.A1_x_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.74	93.8	PtpAffx.160484.1.A1_s_at	CV231727	hypothetical protein	-	3e-13	At5g11450	oxygen-evolving complex-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.6627.1.S1_at	CV245106	hypothetical protein	-	4e-17	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	Ptp.5722.1.S1_at	CV226697	hypothetical protein	-	2e-15	At1g64510	ribosomal protein S6 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.14790.1.A1_s_at	CK091627	hypothetical protein	-	1e-1	At2g24090	ribosomal protein L35 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1	97.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0	95.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1039	PtpAffx.209915.1.S1_at	pmrna19541	hypothetical protein	-	2e-100	At4g18480	CHLI1	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-2	40	PtpAffx.202837.1.S1_at	pmrna5622	hypothetical protein	-	2e+0	At5g63500	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.208629.1.S1_at	pmrna17127	multidrug resistance protein ABC transporter family	-	4e-4	At3g21250	ATMRP6	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.204518.1.S1_at	pmrna8867	hypothetical protein	-	6e-1	At4g29035	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.211296.1.S1_s_at	pmrna22151	hypothetical protein	-	7e-1	At4g05040	ankyrin repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.97555.1.S1_at	CV269672	hypothetical protein	-	7e-28	At4g27490	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.97555.1.S1_s_at	CV269672	hypothetical protein	-	7e-28	At4g27490	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	34	PtpAffx.59126.1.S1_s_at	CA826047	hypothetical protein	-	2e+0	At4g01897	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	34	PtpAffx.55737.1.S1_at	CX187355	-	-	8e-2	At2g06645	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	9e-52	204	Arabidopsis thaliana	At4g18480	827580	CHLI1	Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	0	668	Glycine max	Gma.5672.1.A1_at	D45857.1	-	-	3e-47	At4g18480	CHLI1	C.G.	S.X.	Please select
0.17	3e-10	65	Hordeum vulgare	Contig5341_at	Contig5341	-	-	8e-4	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please select
0.21	5e-30	133	Oryza sativa	Os03g0563300	AK070720.1	-	Magnesium-chelatase subunit chlI, chloroplastprecursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)(Protein CS/CH-42)	1e-31	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	6e-16	85	Triticum aestivum	Ta.15668.1.S1_at	CA486223	-	-	1e-2	At4g18480	CHLI1	C.G.	S.X.	Please select
0.62	3e-175	613	Vitis vinifera	1614655_at	CB969062	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please select
0.10	3e-6	52	Zea mays	Zm.18314.1.S1_at	CO520519	oil yellow1	-	3e+0	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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