Gene omics information

Query gene ID	PtpAffx.26497.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	68.6	PtpAffx.26497.1.S1_at	CK105060	-	-	3e-52	At1g76690	OPR2	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4852.1.A1_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.73516.1.S1_at	CN524588	hypothetical protein	-	4e-45	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.4830.1.S1_at	CX282622	hypothetical protein	-	2e-13	At4g03260	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.4	97.7	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	4e-46	186	PtpAffx.2548.1.A1_at	CV259452	-	-	4e-12	At1g76690	OPR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	9e-32	139	PtpAffx.221339.1.S1_at	pmrna38168	hypothetical protein	-	2e-22	At1g76680	OPR1	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-24	115	PtpAffx.216720.1.S1_s_at	pmrna31684	hypothetical protein	-	1e-14	At1g76690	OPR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	8e-23	109	PtpAffx.78869.1.S1_s_at	BU880489	hypothetical protein	-	9e-14	At1g76690	OPR2	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	8e-23	109	PtpAffx.208369.1.S1_at	pmrna16643	hypothetical protein	-	3e-15	At1g76680	OPR1	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-11	69	Ptp.640.2.S1_s_at	BU894839	hypothetical protein	-	1e-16	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-11	69	Ptp.640.1.S1_s_at	CX186020	hypothetical protein	-	1e-21	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-6	54	PtpAffx.44935.1.A1_at	CV268304	hypothetical protein	-	2e-19	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-6	54	PtpAffx.44935.1.A1_a_at	CV268304	hypothetical protein	-	2e-19	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-52	206	Arabidopsis thaliana	At1g76690	844002	OPR2	Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	8e-57	222	Glycine max	Gma.4360.1.S1_s_at	BG236888	-	-	3e-28	At1g76690	OPR2	C.G.	S.X.	Please select
0.27	3e-20	99	Hordeum vulgare	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	C.G.	S.X.	Please select
0.12	3e-17	91	Oryza sativa	Os.15627.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	6e-17	89	Triticum aestivum	Ta.5509.1.S1_at	CA669976	-	-	1e-17	At1g76690	OPR2	C.G.	S.X.	Please select
0.50	1e-85	315	Vitis vinifera	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.04	1e+0	34	Zea mays	Zm.7548.1.A1_at	BM078903	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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