Gene omics information

Query gene ID PtpAffx.26497.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4268.6PtpAffx.26497.1.S1_atCK105060--3e-52At1g76690OPR2S.X.H.G.
0.3357.5PtpAffx.57734.1.S1_atDN486150--3e-1At1g56200emb1303 (embryo defective 1303)S.X.H.G.
0.3255.2Ptp.4852.1.A1_atCV282615hypothetical protein-5e-22At5g50100-S.X.H.G.
0.1830.8PtpAffx.73516.1.S1_atCN524588hypothetical protein-4e-45At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)S.X.H.G.
0.1219.6Ptp.4830.1.S1_atCX282622hypothetical protein-2e-13At4g03260leucine-rich repeat family proteinS.X.H.G.
0.0711.6PtpAffx.55455.1.S1_a_atCV242141beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein-4e-12At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.498.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
7.298.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
6.497.7GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.497.7GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
5.897.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
5.296.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.896.4GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.796.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.395.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.894.9GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.434e-46186PtpAffx.2548.1.A1_atCV259452--4e-12At1g76690OPR2C.G.S.X.
0.179e-32139PtpAffx.221339.1.S1_atpmrna38168hypothetical protein-2e-22At1g76680OPR1C.G.S.X.
0.141e-24115PtpAffx.216720.1.S1_s_atpmrna31684hypothetical protein-1e-14At1g76690OPR2C.G.S.X.
0.118e-23109PtpAffx.78869.1.S1_s_atBU880489hypothetical protein-9e-14At1g76690OPR2C.G.S.X.
0.148e-23109PtpAffx.208369.1.S1_atpmrna16643hypothetical protein-3e-15At1g76680OPR1C.G.S.X.
0.057e-1169Ptp.640.2.S1_s_atBU894839hypothetical protein-1e-16At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.047e-1169Ptp.640.1.S1_s_atCX186020hypothetical protein-1e-21At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.034e-654PtpAffx.44935.1.A1_atCV268304hypothetical protein-2e-19At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
0.034e-654PtpAffx.44935.1.A1_a_atCV268304hypothetical protein-2e-19At2g06050OPR3 (OPDA-REDUCTASE 3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.373e-52206Arabidopsis thalianaAt1g76690844002OPR2Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.---C.G.S.X.
0.488e-57222Glycine maxGma.4360.1.S1_s_atBG236888--3e-28At1g76690OPR2C.G.S.X.
0.273e-2099Hordeum vulgareContig5146_atContig5146--4e-21At1g76690OPR2C.G.S.X.
0.123e-1791Oryza sativaOs.15627.1.A1_at---0C.G.S.X.
0.246e-1789Triticum aestivumTa.5509.1.S1_atCA669976--1e-17At1g76690OPR2C.G.S.X.
0.501e-85315Vitis vinifera1607601_atCF209956hypothetical protein LOC100244746-2e-15At1g0940012-oxophytodienoate reductase, putativeC.G.S.X.
0.041e+034Zea maysZm.7548.1.A1_atBM07890312-oxo-phytodienoic acid reductase5-5e-11At1g76690OPR2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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