Gene omics information

Query gene ID PtpAffx.25959.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1PtpAffx.25959.1.S1_atDN498122hypothetical protein-2e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinS.X.H.G.
0.3357.5Ptp.2432.1.S1_a_atCK093484hypothetical protein-4e-19At4g27745-S.X.H.G.
0.0914.6PtpAffx.9361.1.A1_atCV241621hypothetical protein-1e-6At1g77660MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedS.X.H.G.
0.046.9PtpAffx.37459.3.S1_atCV242690hypothetical protein-8e-2At2g30590WRKY21S.X.H.G.
0.035.2PtpAffx.4431.4.A1_a_atCV256409hypothetical protein-2e-34At1g30330ARF6 (AUXIN RESPONSE FACTOR 6)S.X.H.G.
0.012.2PtpAffx.18595.1.S1_atBU868736--2e-19At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.799.1GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
6.397.7GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
4.095.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.694.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.594.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
3.193.2GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.634e-48192PtpAffx.25451.1.S1_atAJ778751--6e-5At3g22550senescence-associated protein-relatedC.G.S.X.
0.102e-448PtpAffx.30035.2.A1_s_atCX178612hypothetical protein-5e-3At3g63210MARD1C.G.S.X.
0.082e-344Ptp.2629.1.S1_s_atCV256642hypothetical protein-2e-7At3g63210MARD1C.G.S.X.
0.021e-138Ptp.1343.1.S1_atBI131364hypothetical protein-3e-3At1g69580transcription factorC.G.S.X.
0.032e+034PtpAffx.89020.1.A1_atCV241808hypothetical protein-4e-10At2g25690senescence-associated protein-relatedC.G.S.X.
0.032e+034PtpAffx.85571.2.A1_s_atCK091267hypothetical protein-3e-11At1g79970-C.G.S.X.
0.022e+034PtpAffx.6581.13.S1_atCV245744hypothetical protein-3e-1At5g53592-C.G.S.X.
0.022e+034PtpAffx.59140.3.S1_atCX660193hypothetical protein-6e-21At5g20165unknown proteinC.G.S.X.
0.022e+034PtpAffx.59140.1.S1_a_atCV245466hypothetical protein-1e-22At5g20165unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Arabidopsis thalianaAt5g20160832138ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinF:RNA binding;P:ribosome biogenesis;C:nucleolus;MOAFPB---C.G.S.X.
0.091e-861Glycine maxGma.16783.1.A1_atBU545488--3e-1At5g49120senescence-associated protein-relatedC.G.S.X.
0.043e+032Hordeum vulgareContig11418_atContig11418--8e-3At1g51270structural molecule/ transmembrane receptorC.G.S.X.
0.038e-446Oryza sativaOs03g0665200AK066202.1-Conserved hypothetical protein3e-3At3g63210MARD1C.G.S.X.
0.051e-138Triticum aestivumTa.22389.1.S1_atCA742022--2e-1At1g78480prenyltransferase/squalene oxidase repeat-containing proteinC.G.S.X.
0.045e-134Vitis vinifera1614718_atCB347599hypothetical protein LOC100264520-7e-11At5g20700senescence-associated protein-relatedC.G.S.X.
0.033e+032Zea maysZmAffx.992.1.A1_atAI855055--8e-1At2g02570nucleic acid bindingC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage