CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.25638.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 PtpAffx.25638.2.S1_at CK102898 hypothetical protein - 3e-10 At4g17310 unknown protein S.X. H.G.
0.48 75.4 Ptp.1890.1.S1_at CV263640 hypothetical protein - 1e-163 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) S.X. H.G.
0.43 69.7 Ptp.2051.1.S1_at CV243394 hypothetical protein - 2e-16 At2g39990 EIF2 S.X. H.G.
0.36 61.6 PtpAffx.17919.2.A1_at CV275513 - - 4e-26 At3g04770 RPSAb (40S ribosomal protein SA B) S.X. H.G.
0.33 57.5 PtpAffx.17919.2.A1_x_at CV275513 - - 4e-26 At3g04770 RPSAb (40S ribosomal protein SA B) S.X. H.G.
0.28 50.5 Ptp.2710.1.S1_s_at BU865876 hypothetical protein - 2e-14 At3g06700 60S ribosomal protein L29 (RPL29A) S.X. H.G.
0.11 18.1 PtpAffx.90967.2.S1_s_at CA821599 hypothetical protein - 5e-6 At3g49460 60S acidic ribosomal protein-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-55 216 PtpAffx.25638.1.S1_a_at CV244998 hypothetical protein - 4e-16 At4g17310 unknown protein C.G. S.X.
0.38 2e-55 216 PtpAffx.25638.1.S1_at CV244998 hypothetical protein - 4e-16 At4g17310 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.223860.1.S1_at pmrna42079 hypothetical protein - 1e+0 At5g10310 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.203720.1.S1_at pmrna7356 hypothetical protein - 1e+0 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.02 4e-1 36 PtpAffx.200043.1.S1_x_at pmrna74 hypothetical protein - 1e-89 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.02 4e-1 36 PtpAffx.200043.1.S1_at pmrna74 hypothetical protein - 1e-89 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.03 4e-1 36 PtpAffx.1932.1.S1_at CK094304 - - 4e-1 At2g45420 LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) C.G. S.X.
0.02 2e+0 34 PtpAffx.69905.1.A1_at CV245342 hypothetical protein - 4e-27 At4g12790 ATP-binding family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.214981.1.S1_at pmrna28917 hypothetical protein - 3e+1 At5g42635 glycine-rich protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-10 65 Arabidopsis thaliana At4g17310 827444 unknown protein F:unknown;P:unknown;C:chloroplast;P - - - C.G. S.X.
0.12 3e-2 40 Glycine max GmaAffx.72561.2.S1_at BG155858 - - 2e-10 At4g17310 unknown protein C.G. S.X.
0.04 6e-1 34 Hordeum vulgare Contig20877_at Contig20877 - - 5e-6 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) C.G. S.X.
0.07 1e-5 52 Oryza sativa OsAffx.24715.1.S1_at - - - 0 C.G. S.X.
0.06 3e-4 46 Triticum aestivum TaAffx.57652.1.S1_at CA626274 - - 1e-9 At4g17310 unknown protein C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1622458_at CB001788 - - 1e+0 At1g51570 C2 domain-containing protein C.G. S.X.
0.05 1e-4 46 Zea mays Zm.17347.1.S1_at CK370714 hypothetical protein LOC100217009 - 1e-9 At4g17310 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage