CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.25638.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 96.3 PtpAffx.25638.1.S1_a_at CV244998 hypothetical protein - 4e-16 At4g17310 unknown protein S.X. H.G.
0.55 82.2 Ptp.4505.1.S1_s_at CV244818 hypothetical protein - 3e-5 At3g06040 ribosomal protein L12 family protein S.X. H.G.
0.52 79.4 Ptp.4492.2.S1_a_at CF936740 hypothetical protein - 1e+0 At1g47260 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) S.X. H.G.
0.50 78.6 Ptp.4439.1.S1_s_at CV237743 hypothetical protein - 6e-3 At1g31760 SWIB complex BAF60b domain-containing protein S.X. H.G.
0.49 75.7 PtpAffx.25566.1.S1_at CV237120 hypothetical protein - 5e-20 At4g26780 AR192 S.X. H.G.
0.48 75.4 Ptp.1555.1.S1_a_at CV263349 hypothetical protein - 7e-31 At3g10950 60S ribosomal protein L37a (RPL37aB) S.X. H.G.
0.46 73.7 Ptp.1555.1.S1_at CV263349 hypothetical protein - 7e-31 At3g10950 60S ribosomal protein L37a (RPL37aB) S.X. H.G.
0.45 72.3 Ptp.639.1.S1_at CN523522 hypothetical protein - 6e-37 At1g65290 mtACP2 (mitochondrial acyl carrier protein 2) S.X. H.G.
0.45 72.3 PtpAffx.118020.1.S1_at CV246735 hypothetical protein - 1e+0 At5g07930 MCT2 (mei2 C-Terminal RRM only like 2) S.X. H.G.
0.44 71.9 Ptp.226.1.S1_at CV241733 hypothetical protein - 7e-78 At3g20050 ATTCP-1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6 84.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1249 PtpAffx.25638.1.S1_at CV244998 hypothetical protein - 4e-16 At4g17310 unknown protein C.G. S.X.
0.38 2e-55 216 PtpAffx.25638.2.S1_at CK102898 hypothetical protein - 3e-10 At4g17310 unknown protein C.G. S.X.
0.03 3e-2 40 PtpAffx.214981.1.S1_at pmrna28917 hypothetical protein - 3e+1 At5g42635 glycine-rich protein C.G. S.X.
0.03 5e-1 36 PtpAffx.220540.1.S1_at pmrna36944 hypothetical protein - 2e+1 At2g42590 GRF9 (GENERAL REGULATORY FACTOR 9) C.G. S.X.
0.03 2e+0 34 PtpAffx.64449.1.S1_at CN517873 hypothetical protein - 6e-2 At3g62610 ATMYB11 (MYB DOMAIN PROTEIN 11) C.G. S.X.
0.01 2e+0 34 PtpAffx.224548.1.S1_at pmrna43181 hypothetical protein - 4e-37 At1g06710 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 2e+0 34 PtpAffx.222463.1.S1_at pmrna39884 hypothetical protein - 1e-1 At5g42765 - C.G. S.X.
0.02 2e+0 34 PtpAffx.201693.1.S1_s_at pmrna3378 hypothetical protein - 7e-10 At3g22970 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.160149.1.A1_at CV266444 hypothetical protein - 1e-1 At2g38820 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-16 85 Arabidopsis thaliana At4g17310 827444 unknown protein F:unknown;P:unknown;C:chloroplast;P - - - C.G. S.X.
0.12 5e-4 46 Glycine max GmaAffx.72561.2.S1_at BG155858 - - 2e-10 At4g17310 unknown protein C.G. S.X.
0.07 1e-5 50 Hordeum vulgare Contig22648_at Contig22648 - - 6e-8 At4g17310 unknown protein C.G. S.X.
0.07 2e-7 57 Oryza sativa OsAffx.24715.1.S1_at - - - 0 C.G. S.X.
0.12 6e-6 52 Triticum aestivum TaAffx.57652.1.S1_at CA626274 - - 1e-9 At4g17310 unknown protein C.G. S.X.
0.19 2e-6 52 Vitis vinifera 1619730_at CF414615 hypothetical protein LOC100248900 - 4e+0 At3g60490 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.05 2e-6 52 Zea mays Zm.17347.1.S1_at CK370714 hypothetical protein LOC100217009 - 1e-9 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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