CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.25432.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.25432.1.S1_x_at CA822387 hypothetical protein - 7e+0 At4g03505 - S.X. H.G.
0.67 91.1 PtpAffx.249.204.S1_s_at CV264402 hypothetical protein - 7e+0 At3g56850 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) S.X. H.G.
0.67 91.1 PtpAffx.1759.1.S1_at CX168796 hypothetical protein - 6e-1 At5g60620 phospholipid/glycerol acyltransferase family protein S.X. H.G.
0.63 88.1 PtpAffx.7681.5.A1_at CV279861 - - 3e-35 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) S.X. H.G.
0.61 87.0 PtpAffx.35351.2.S1_a_at CA822208 hypothetical protein - 1e+0 At3g49760 AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5) S.X. H.G.
0.50 78.6 Ptp.7045.2.S1_at CV249958 hypothetical protein - 1e+0 At1g17860 trypsin and protease inhibitor family protein / Kunitz family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.3 99.0 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
10.2 99.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.9 98.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.9 98.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 1047 Ptp.2794.1.S1_x_at CF936190 hypothetical protein - 7e+0 At5g43285 - C.G. S.X.
0.80 0 1047 Ptp.2794.1.S1_s_at CF936190 hypothetical protein - 7e+0 At5g43285 - C.G. S.X.
0.04 6e-1 36 Ptp.3741.1.S1_s_at CK112104 hypothetical protein - 6e+0 At1g02350 protoporphyrinogen oxidase-related C.G. S.X.
0.02 3e+0 34 PtpAffx.63924.1.S1_at BP931275 - - 5e+0 At5g54110 ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) C.G. S.X.
0.02 3e+0 34 PtpAffx.249.399.A1_at CV254403 - - 2e+0 At3g12660 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) C.G. S.X.
0.02 3e+0 34 PtpAffx.221697.1.S1_at pmrna38714 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.220310.1.S1_at pmrna36680 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.220310.1.S1_x_at pmrna36680 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.217648.1.S1_at pmrna32998 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 32 Arabidopsis thaliana At4g03505 3769831 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.3539.2.A1_at BG157525 - - 1e-33 At3g47420 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative C.G. S.X.
0.03 9e-1 34 Hordeum vulgare HVSMEn0020J05f_x_at HVSMEn0020J05f - - 2e-1 At3g12345 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os08g0428100 9636.m03318 - Cyclin-like F-box domain containing protein 5e-1 At1g12500 phosphate translocator-related C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.129057.3.A1_at CA624008 - - 1e-3 At2g25720 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622343_at BQ794086 - - 8e+0 At3g47650 bundle-sheath defective protein 2 family / bsd2 family C.G. S.X.
0.03 3e+0 32 Zea mays Zm.6402.3.S1_a_at AI770444 DELLA protein DWARF8 /// dwarf plant9 - 8e-1 At5g42635 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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