Gene omics information

Query gene ID PtpAffx.2542.2.S1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.2542.2.S1_a_atCN522327hypothetical protein-7e-22At5g47870unknown proteinS.X.H.G.
0.6791.1PtpAffx.76902.1.S1_atCV274814hypothetical protein-2e-22At5g57700BNR/Asp-box repeat family proteinS.X.H.G.
0.6388.1PtpAffx.206499.1.S1_atpmrna12891dicer-like protein-6e-32At5g20320DCL4 (DICER-LIKE 4)S.X.H.G.
0.5078.6PtpAffx.3772.1.A1_atBP934755hypothetical protein-6e+0At3g15150zinc ion bindingS.X.H.G.
0.3863.7PtpAffx.216911.1.S1_atpmrna31978hypothetical protein-5e-23At5g15730serine/threonine protein kinase, putativeS.X.H.G.
0.3661.6PtpAffx.208262.1.S1_atpmrna16442hypothetical protein-6e-17At3g26090RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1)S.X.H.G.
0.3357.5PtpAffx.3505.1.A1_atBP935453hypothetical protein-1e-10At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)S.X.H.G.
0.1932.7PtpAffx.52208.2.A1_a_atCV272283hypothetical protein-1e-3At1g72550tRNA synthetase beta subunit family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.193.2GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.691.3GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.490.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.289.3GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001875PtpAffx.2542.2.S1_atCN522327hypothetical protein-7e-22At5g47870unknown proteinC.G.S.X.
0.600680PtpAffx.2542.1.S1_atCV255768--9e-31At5g47870unknown proteinC.G.S.X.
0.025e-240PtpAffx.20696.1.S1_atCX654772--4e-5At1g65690harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedC.G.S.X.
0.042e-138PtpAffx.22473.2.A1_a_atCV274379--3e-8At1g71310unknown proteinC.G.S.X.
0.037e-136PtpAffx.88672.1.A1_atCV256993--6e-1At3g21175ZML1 (ZIM-LIKE 1)C.G.S.X.
0.017e-136PtpAffx.205299.1.S1_atpmrna10512hypothetical protein-4e-19At1g21630calcium-binding EF hand family proteinC.G.S.X.
0.017e-136PtpAffx.201006.1.S1_atpmrna1976hypothetical protein-5e-37At3g27330zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e+034PtpAffx.80170.1.S1_atDN497648--5e+0At5g23840MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinC.G.S.X.
0.023e+034PtpAffx.65420.1.S1_atCF228730hypothetical protein-1e+0At5g37730unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.327e-22105Arabidopsis thalianaAt5g47870834838unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO---C.G.S.X.
0.186e-2099Glycine maxGma.7595.1.S1_atBE820889--3e-5At5g47870unknown proteinC.G.S.X.
0.052e-550Hordeum vulgareContig9095_atContig9095--2e+0At1g29380-C.G.S.X.
0.034e+034Oryza sativaOs04g0456700AK065178.1-Lipoxygenase, LH2 domain containing protein3e-2At1g72210basic helix-loop-helix (bHLH) family protein (bHLH096)C.G.S.X.
0.084e-240Triticum aestivumTa.18931.2.S1_a_atCA656734--2e-11At5g47870unknown proteinC.G.S.X.
0.226e-35147Vitis vinifera1614492_atCF404505hypothetical protein LOC100260946-7e-22At5g47870unknown proteinC.G.S.X.
0.064e-342Zea maysZm.9440.1.A1_atCF635755snRK1-interacting protein 1-3e-14At5g47870unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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