CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.254.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.254.1.S1_s_at CV268035 hypothetical protein - 1e-20 At2g47115 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) S.X. H.G.
0.40 67.0 Ptp.6932.1.A1_s_at CV241157 hypothetical protein - 6e-17 At4g35850 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.16 26.9 PtpAffx.7251.1.S1_at BU812613 hypothetical protein - 4e-11 At5g65260 polyadenylate-binding protein family protein / PABP family protein S.X. H.G.
0.08 12.9 Ptp.1559.1.S1_s_at CV233926 hypothetical protein - 2e-31 At5g15200 40S ribosomal protein S9 (RPS9B) S.X. H.G.
0.06 9.8 PtpAffx.212858.1.S1_s_at pmrna25162 hypothetical protein - 3e-80 At3g12860 nucleolar protein Nop56, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 3e-102 373 PtpAffx.254.2.S1_at CV265087 hypothetical protein - 1e-12 At2g47115 unknown protein C.G. S.X.
0.35 8e-63 242 PtpAffx.254.3.S1_at DN485849 hypothetical protein - 1e-2 At2g47115 unknown protein C.G. S.X.
0.02 6e-2 40 PtpAffx.101965.1.A1_at CV245253 - - 1e-1 At2g36261 unknown protein C.G. S.X.
0.03 2e-1 38 PtpAffx.200956.1.S1_at pmrna1876 hypothetical protein - 8e-6 At1g70505 unknown protein C.G. S.X.
0.02 9e-1 36 PtpAffx.75285.1.A1_at CV276193 hypothetical protein - 2e+0 At5g24000 unknown protein C.G. S.X.
0.02 9e-1 36 PtpAffx.24864.1.A1_at CV243260 hypothetical protein - 1e-1 At1g49860 ATGSTF14 C.G. S.X.
0.02 9e-1 36 PtpAffx.215789.1.S1_at pmrna30178 hypothetical protein - 2e+0 At4g10955 lipase class 3 family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.121351.1.A1_at CV243424 - - 1e+0 At3g52150 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 9e-1 36 Ptp.4074.1.S1_at CV272766 regulatory subunit of cyclin-dependent kinase - 1e-47 At2g27960 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-20 101 Arabidopsis thaliana At2g47115 819324 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMVFO - - - C.G. S.X.
0.03 2e-5 52 Glycine max Gma.13183.1.S1_at BI425420 - - 2e-1 At1g10660 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig3229_s_at Contig3229 - - 7e+0 At5g54410 unknown protein C.G. S.X.
0.03 5e-3 44 Oryza sativa Os04g0401000 CB652365 - Heavy metal transport/detoxification proteindomain containing protein 8e-2 At5g59040 COPT3 C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.5150.1.S1_at BJ277575 - - 8e-1 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.12 4e-18 91 Vitis vinifera 1608521_at CA817176 hypothetical protein LOC100253796 - 6e-16 At2g47115 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.908.1.A1_at AI770943 - - 8e-1 At5g41720 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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