CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.2522.1.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.2522.1.A1_a_at M25337.1 hypothetical protein - 9e+0 At5g63070 40S ribosomal protein S15, putative S.X. H.G.
0.77 94.9 PtpAffx.224823.1.S1_at pmrna43694 hypothetical protein - 2e-3 At1g29730 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
0.60 86.0 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.47 74.6 PtpAffx.225230.1.S1_at pmrna44421 hypothetical protein - 4e-19 At4g27290 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding S.X. H.G.
0.44 71.9 PtpAffx.221583.1.S1_at pmrna38538 nbs-lrr resistance protein - 9e-1 At2g38790 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.216797.1.S1_at pmrna31816 hypothetical protein - 6e-13 At5g20400 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.1 100.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.6 99.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
13.3 99.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.8 72.0 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
0.8 72.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.8 72.0 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
0.6 66.6 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.83 0 1227 PtpAffx.2522.3.A1_at CV269821 hypothetical protein - 6e-1 At3g18160 peroxin-3 family protein C.G. S.X.
0.75 0 888 Ptp.3754.1.A1_at DN497958 - - 7e-3 At1g02360 chitinase, putative C.G. S.X.
0.22 9e-152 537 PtpAffx.2522.4.S1_at CV268467 - - 7e-7 At5g58575 - C.G. S.X.
0.09 3e-6 54 PtpAffx.77318.2.S1_at CX658035 hypothetical protein - 5e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.07 3e-6 54 Ptp.4052.2.A1_at CV258257 - - 4e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.07 8e-4 46 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.07 8e-4 46 PtpAffx.77318.1.S1_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.03 1e-2 42 PtpAffx.219989.1.S1_at pmrna36208 hypothetical protein - 4e+0 At5g64460 - C.G. S.X.
0.02 8e-1 36 PtpAffx.25383.2.A1_at CA823290 hypothetical protein - 2e-15 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e+0 32 Arabidopsis thaliana At5g63070 836427 40S ribosomal protein S15, putative F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;BOPMAF - - - C.G. S.X.
0.02 8e-1 36 Glycine max HgAffx.8508.1.S1_at CB379993 - - 7e-2 At1g51330 serpin-related / serine protease inhibitor-related C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig4324_s_at Contig4324 - - 8e+0 At4g26060 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os04g0494100 AB096140.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative C.G. S.X.
0.04 4e-2 40 Triticum aestivum Ta.2278.3.S1_x_at CD490414 - - 6e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1607557_at CF202548.1 - - 7e-3 At3g54420 ATEP3 C.G. S.X.
0.03 6e-2 38 Zea mays Zm.1595.1.S1_at CD967190 endochitinase A - 6e-1 At3g54420 ATEP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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