CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.25116.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.25116.1.A1_at CV228813 hypothetical protein - 2e-8 At3g54130 josephin family protein S.X. H.G.
0.50 78.6 PtpAffx.67146.1.S1_s_at BI120910 hypothetical protein - 1e-30 At1g07510 ftsh10 (FtsH protease 10) S.X. H.G.
0.50 78.6 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein S.X. H.G.
0.40 67.0 Ptp.663.1.S1_x_at AY302065.1 hypothetical protein - 1e-90 At1g10630 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) S.X. H.G.
0.31 53.7 PtpAffx.15375.1.S1_at CV232670 - - 5e-20 At3g53000 AtPP2-A15 (Phloem protein 2-A15) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 4e-100 365 PtpAffx.40925.1.S1_at CK093170 hypothetical protein - 2e-13 At3g54130 josephin family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.209436.1.S1_at pmrna18683 hypothetical protein - 1e-7 At3g10470 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.51524.2.S1_at CN518630 - - 2e-24 At3g20790 oxidoreductase family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.24926.1.A1_at CV241206 hypothetical protein - 4e-3 At1g79770 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211704.1.S1_at pmrna22940 hypothetical protein - 4e-8 At4g01960 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.204586.1.S1_at pmrna9007 hypothetical protein - 2e-6 At2g21350 RNA binding C.G. S.X.
0.02 2e+0 34 PtpAffx.204211.1.S1_at pmrna8279 hypothetical protein - 5e-10 At1g11760 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.201972.1.S1_at pmrna3942 hypothetical protein - 5e-14 At3g28670 oxidoreductase/ zinc ion binding C.G. S.X.
0.04 2e+0 34 PtpAffx.18890.1.A1_a_at CV230125 magnesium transporter - 2e-13 At3g19640 magnesium transporter CorA-like family protein (MRS2-3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-8 59 Arabidopsis thaliana At3g54130 824580 josephin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF - - - C.G. S.X.
0.07 1e-10 67 Glycine max GmaAffx.77124.1.S1_at BE804214 - - 2e-21 At3g54130 josephin family protein C.G. S.X.
0.04 4e-2 38 Hordeum vulgare HVSMEa0002F14r2_at HVSMEa0002F14r2 - - 4e+0 At5g26630 MADS-box protein (AGL35) C.G. S.X.
0.03 2e-1 38 Oryza sativa Os01g0851400 AU102085 - Machado-Joseph disease-like protein (MJD1a-like)(Ataxin-3 homolog) 6e-1 At3g23245 unknown protein C.G. S.X.
0.08 6e-6 52 Triticum aestivum TaAffx.9136.1.S1_at CA610856 - - 7e-4 At3g54130 josephin family protein C.G. S.X.
0.05 3e-8 57 Vitis vinifera 1617661_at CF516668 hypothetical protein LOC100249311 - 4e+0 At4g00580 COP1-interacting protein-related C.G. S.X.
0.05 2e-4 46 Zea mays Zm.10522.2.A1_at BQ538089 ataxin-3 - 3e-1 At3g06610 DNA-binding enhancer protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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