Gene omics information

Query gene ID PtpAffx.25004.4.S1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5683.9PtpAffx.25004.4.S1_a_atCV237911hypothetical protein-1e-3At5g01870lipid transfer protein, putativeS.X.H.G.
0.4067.0PtpAffx.206091.1.S1_atpmrna12066hypothetical protein-5e-13At3g10185-S.X.H.G.
0.3863.7PtpAffx.69240.1.A1_s_atCV264990hypothetical protein-5e-1At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)S.X.H.G.
0.3559.7PtpAffx.4493.1.A1_x_atCV237113hypothetical protein-6e-1At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinS.X.H.G.
0.2543.6PtpAffx.98425.1.S1_atBU875119hypothetical protein-2e-5At4g25640MATE efflux family proteinS.X.H.G.
0.1118.1PtpAffx.224516.1.S1_s_atpmrna43133hypothetical protein-2e-9At1g22640MYB3 (MYB DOMAIN PROTEIN 3)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.199.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.798.6GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.298.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.897.4GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.797.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.196.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.196.8GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.096.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.096.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.596.1GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.316e-59228PtpAffx.25004.5.A1_a_atCV239237hypothetical protein-7e-24At3g11200AL2 (ALFIN-LIKE 2)C.G.S.X.
0.015e-136PtpAffx.225230.1.S1_atpmrna44421hypothetical protein-4e-19At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
0.035e-136PtpAffx.201202.1.S1_atpmrna2385hypothetical protein-3e-4At1g50000methyltransferaseC.G.S.X.
0.015e-136Ptp.2172.1.S1_atCV271946hypothetical protein-1e-98At1g58290HEMA1C.G.S.X.
0.022e+034PtpAffx.203764.1.S1_atpmrna7436hypothetical protein-9e-22At4g21580oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.022e+034Ptp.3739.1.S1_s_atCK097141hypothetical protein-4e-20At4g21580oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.027e+032PtpAffx.32240.1.S1_atBP933424hypothetical protein-4e-2At3g24050GATA transcription factor 1 (GATA-1)C.G.S.X.
0.017e+032PtpAffx.221978.1.S1_atpmrna39133hypothetical protein-1e-19At3g51120DNA binding / nucleic acid binding / protein binding / zinc ion bindingC.G.S.X.
0.037e+032PtpAffx.220776.1.S1_atpmrna37203hypothetical protein-1e-37At5g20940glycosyl hydrolase family 3 proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-344Arabidopsis thalianaAt5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.---C.G.S.X.
0.028e+032Glycine maxPsAffx.CL2296Contig1_atPsAffx.CL2296Contig1--4e-1At3g07310unknown proteinC.G.S.X.
0.037e-134Hordeum vulgareHU05C09u_s_atHU05C09u--5e-2At5g55620unknown proteinC.G.S.X.
0.043e-344Oryza sativaOs06g06772009634.m04508--2e-1At3g56580zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.036e+032Triticum aestivumTaAffx.57768.1.S1_atCA625247--1e-1At1g14680unknown proteinC.G.S.X.
0.084e-134Vitis vinifera1617032_s_atAF465408.1lipid transfer protein /// lipid transfer protein-9e-1At5g01870lipid transfer protein, putativeC.G.S.X.
0.032e+032Zea maysZm.15117.1.A1_atBM078934hypothetical protein LOC100275879-4e+0At1g52827unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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