Gene omics information

Query gene ID	PtpAffx.25004.4.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.25004.4.S1_a_at	CV237911	hypothetical protein	-	1e-3	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.206091.1.S1_at	pmrna12066	hypothetical protein	-	5e-13	At3g10185	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.69240.1.A1_s_at	CV264990	hypothetical protein	-	5e-1	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.4493.1.A1_x_at	CV237113	hypothetical protein	-	6e-1	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.98425.1.S1_at	BU875119	hypothetical protein	-	2e-5	At4g25640	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.224516.1.S1_s_at	pmrna43133	hypothetical protein	-	2e-9	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.1	99.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.7	98.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.2	98.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.8	97.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7	97.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1	96.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.0	96.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	6e-59	228	PtpAffx.25004.5.A1_a_at	CV239237	hypothetical protein	-	7e-24	At3g11200	AL2 (ALFIN-LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.225230.1.S1_at	pmrna44421	hypothetical protein	-	4e-19	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.201202.1.S1_at	pmrna2385	hypothetical protein	-	3e-4	At1g50000	methyltransferase	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	Ptp.2172.1.S1_at	CV271946	hypothetical protein	-	1e-98	At1g58290	HEMA1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.203764.1.S1_at	pmrna7436	hypothetical protein	-	9e-22	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.3739.1.S1_s_at	CK097141	hypothetical protein	-	4e-20	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.32240.1.S1_at	BP933424	hypothetical protein	-	4e-2	At3g24050	GATA transcription factor 1 (GATA-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e+0	32	PtpAffx.221978.1.S1_at	pmrna39133	hypothetical protein	-	1e-19	At3g51120	DNA binding / nucleic acid binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.220776.1.S1_at	pmrna37203	hypothetical protein	-	1e-37	At5g20940	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Arabidopsis thaliana	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e+0	32	Glycine max	PsAffx.CL2296Contig1_at	PsAffx.CL2296Contig1	-	-	4e-1	At3g07310	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	HU05C09u_s_at	HU05C09u	-	-	5e-2	At5g55620	unknown protein	C.G.	S.X.	Please select
0.04	3e-3	44	Oryza sativa	Os06g0677200	9634.m04508	-	-	2e-1	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.57768.1.S1_at	CA625247	-	-	1e-1	At1g14680	unknown protein	C.G.	S.X.	Please select
0.08	4e-1	34	Vitis vinifera	1617032_s_at	AF465408.1	lipid transfer protein /// lipid transfer protein	-	9e-1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.15117.1.A1_at	BM078934	hypothetical protein LOC100275879	-	4e+0	At1g52827	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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