Gene omics information

Query gene ID	PtpAffx.249.66.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.249.66.A1_s_at	CV227553	hypothetical protein	-	2e-52	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please selecteFP Browser (expression)
0.89	97.8	PtpAffx.14196.1.S1_s_at	CV251866	hypothetical protein	-	4e-4	At1g72020	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.13016.1.S1_s_at	CV273742	hypothetical protein	-	2e-46	At1g09330	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.11912.1.S1_at	CV247192	hypothetical protein	-	2e-34	At3g07680	emp24/gp25L/p24 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.746.1.A1_at	CV251238	hypothetical protein	-	3e-2	At2g16595	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.4942.2.S1_s_at	CV236355	hypothetical protein	-	1e-11	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.450.1.S1_at	CK318302	hypothetical protein	-	2e-72	At5g50850	MAB1 (MACCI-BOU)	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.936.1.S1_s_at	AF121194.2	hypothetical protein	-	2e-50	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.2351.1.S1_s_at	CF936500	hypothetical protein	-	2e-6	At4g30010	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	PtpAffx.56923.1.S1_at	BI123150	hypothetical protein	-	2e-77	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.249.408.A1_at	CV278060	-	-	4e+0	At5g39880	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.214592.1.S1_x_at	pmrna28361	hypothetical protein	-	1e+0	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.207325.1.S1_at	pmrna14523	hypothetical protein	-	5e-9	At2g23755	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.201837.1.S1_at	pmrna3659	hypothetical protein	-	2e-4	At1g77250	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.131193.1.S1_at	CK095673	hypothetical protein	-	6e+0	At2g02840	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.118623.2.S1_at	BI072874	hypothetical protein	-	3e-6	At1g70820	phosphoglucomutase, putative / glucose phosphomutase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.822.1.S1_at	CV245023	light-harvesting complex II protein Lhcb4	-	6e-10	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.822.1.S1_x_at	CV245023	light-harvesting complex II protein Lhcb4	-	6e-10	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-52	206	Arabidopsis thaliana	At2g33040	817866	ATP synthase gamma chain, mitochondrial (ATPC)	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	3e-76	286	Glycine max	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.29	8e-47	186	Hordeum vulgare	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.22	4e-30	133	Oryza sativa	Os.10703.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	2e-36	153	Triticum aestivum	Ta.14480.2.S1_at	BU099921	-	-	3e-28	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.37	2e-98	357	Vitis vinifera	1611755_at	CB918301	hypothetical protein LOC100246670	-	4e-27	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.23	8e-22	103	Zea mays	Zm.5289.2.A1_a_at	AI600945	hypothetical protein LOC100274172	-	1e-30	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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