Gene omics information

Query gene ID	PtpAffx.249.47.A1_s_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.249.47.A1_s_at	CV256610	-	-	1e-3	At4g11650	ATOSM34 (osmotin 34)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.9992.1.S1_at	CV280429	hypothetical protein	-	6e-4	At5g09440	EXL4 (EXORDIUM LIKE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.6058.1.S1_s_at	BU880130	hypothetical protein	-	1e-103	At5g57655	xylose isomerase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.6120.1.S1_at	CV240779	hypothetical protein	-	6e-9	At3g15580	APG8H (AUTOPHAGY 8H)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.4661.1.S1_s_at	CV256788	hypothetical protein	-	1e-19	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.1025.12.S1_at	BU882243	hypothetical protein	-	1e-19	At5g40760	G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	1120	PtpAffx.249.600.S1_s_at	CV240351	hypothetical protein	-	4e-1	At3g13310	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	6e-92	339	PtpAffx.17701.1.A1_at	CV276062	-	-	5e+0	At5g62576	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-45	184	PtpAffx.5712.1.S1_at	CV237759	hypothetical protein	-	3e-2	At3g13310	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-8	61	PtpAffx.62530.1.A1_at	CV276012	-	-	6e+0	At4g17930	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-6	54	PtpAffx.2271.1.S1_s_at	CA933996	hypothetical protein	-	1e-4	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-6	54	PtpAffx.2271.1.S1_at	CA933996	hypothetical protein	-	1e-4	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-6	54	Ptp.4222.1.S1_at	BU891916	hypothetical protein	-	2e-6	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-5	50	Ptp.2176.1.S1_at	CK090158	hypothetical protein	-	3e-2	At2g17880	DNAJ heat shock protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-3	46	PtpAffx.200440.1.S1_at	pmrna886	hypothetical protein	-	1e+0	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-3	46	Arabidopsis thaliana	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-8	61	Glycine max	GmaAffx.92230.1.A1_s_at	CF807955	PR-5b protein	-	9e-2	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.01	7e+0	32	Hordeum vulgare	Contig14662_at	Contig14662	-	-	3e-1	At4g03180	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	34	Oryza sativa	Os10g0118200	AK069308.1	-	O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)	2e-1	At1g21130	O-methyltransferase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Triticum aestivum	TaAffx.80004.1.S1_at	CA704450	-	-	6e-2	At5g66815	unknown protein	C.G.	S.X.	Please select
0.13	5e-6	52	Vitis vinifera	1613180_at	AF178653.1	-	-	3e+0	At5g64820	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.19144.1.A1_at	CO518283	hypothetical protein LOC100217274	-	1e+0	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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