Gene omics information

Query gene ID	PtpAffx.249.280.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	91.7	PtpAffx.249.280.S1_a_at	CK094419	hypothetical protein	-	5e-9	At1g55510	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.39331.1.S1_at	BU831384	hypothetical protein	-	4e-21	At5g46150	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.328.1.A1_at	CK088363	jumonji domain protein	-	1e+0	At3g56120	Met-10+ like family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.134562.2.A1_at	DN486241	hypothetical protein	-	2e+0	At4g25400	basix helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.18054.1.A1_at	CV263289	-	-	1e-1	At5g64810	WRKY51	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.7705.1.S1_at	DN498489	hypothetical protein	-	5e-34	At3g09560	lipin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.53417.1.S1_a_at	CK090651	hypothetical protein	-	3e-8	At1g10700	ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.2532.1.S1_x_at	CV277382	hypothetical protein	-	3e-52	At1g01820	PEX11C (PEROXIN 11C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.14589.1.S1_at	BU892879	hypothetical protein	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-3	44	PtpAffx.203543.1.S1_at	pmrna7034	hypothetical protein	-	1e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-2	40	PtpAffx.209775.1.S1_at	pmrna19282	hypothetical protein	-	2e-1	At3g14200	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	38	PtpAffx.200144.1.S1_at	pmrna268	hypothetical protein	-	2e+0	At3g20820	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	Ptp.1991.1.S1_at	CK088783	hypothetical protein	-	1e-1	At3g53850	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.76531.1.S1_at	CF233789	hypothetical protein	-	1e+0	At5g06380	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.6774.1.S1_s_at	CV239196	hypothetical protein	-	4e-37	Atcg01130	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.52186.1.S1_at	CK105025	-	-	9e+0	At3g20000	TOM40	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.212672.1.S1_at	pmrna24789	hypothetical protein	-	5e-12	At1g48760	delta-ADR (delta-adaptin)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.209012.1.S1_at	pmrna17852	-	-	1e-1	At5g38820	amino acid transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-9	61	Arabidopsis thaliana	At1g55510	841998	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	branched-chain alpha-keto acid decarboxylase E1 beta	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-4	48	Glycine max	Gma.1242.1.S1_at	AI416885	-	-	2e-52	At1g55510	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig22099_at	Contig22099	-	-	4e+0	At5g53030	unknown protein	C.G.	S.X.	Please select
0.05	2e-3	44	Oryza sativa	OsAffx.21540.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-3	44	Triticum aestivum	TaAffx.56010.1.S1_at	CA658543	-	-	1e+0	At3g23860	GTP-binding protein-related	C.G.	S.X.	Please select
0.04	5e-3	40	Vitis vinifera	1612905_s_at	CB345326	hypothetical protein LOC100258381	-	5e-3	At1g12830	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.6905.3.A1_a_at	CD444092	histone1a /// histone H1-like protein	-	3e-1	At4g04620	ATG8B (autophagy 8b)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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