CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.249.169.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.249.169.A1_a_at CV260069 hypothetical protein - 1e+0 At5g42030 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) S.X. H.G.
0.50 78.6 PtpAffx.225604.1.S1_at pmrna45061 tir-nbs-lrr resistance protein - 7e-9 At3g59780 - S.X. H.G.
0.50 78.6 PtpAffx.211534.1.S1_at pmrna22601 hypothetical protein - 3e+0 At5g44940 F-box family protein S.X. H.G.
0.33 57.5 Ptp.1489.2.S1_s_at CF229570 hypothetical protein - 2e-2 At3g60080 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.32 55.2 PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein S.X. H.G.
0.31 53.7 PtpAffx.72170.1.A1_at AJ774608 hypothetical protein - 4e-1 At3g23600 dienelactone hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 98.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.7 98.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.3 98.2 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.9 97.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.8 97.4 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7 96.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 5e-164 577 PtpAffx.249.716.A1_at CV260753 - - 1e+1 At5g43695 unknown protein C.G. S.X.
0.12 1e-13 77 PtpAffx.10384.2.S1_at CB240311 - - 1e+0 At3g22530 unknown protein C.G. S.X.
0.13 1e-10 67 PtpAffx.54783.1.A1_at DN488000 - - 9e+0 At5g41071 unknown protein C.G. S.X.
0.08 5e-7 56 Ptp.3868.3.S1_s_at BU897031 hypothetical protein - 2e+0 At5g16650 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 7e-3 42 PtpAffx.137949.1.A1_s_at CV227672 - - 4e-2 At3g50730 protein kinase, putative C.G. S.X.
0.08 4e-1 36 PtpAffx.219375.1.S1_at pmrna35284 hypothetical protein - 4e+0 At5g09510 40S ribosomal protein S15 (RPS15D) C.G. S.X.
0.07 4e-1 36 PtpAffx.214746.1.S1_s_at pmrna28580 hypothetical protein - 4e+0 At5g09510 40S ribosomal protein S15 (RPS15D) C.G. S.X.
0.01 4e-1 36 PtpAffx.209594.1.S1_at pmrna18979 hypothetical protein - 1e+0 At5g28900 calcium-binding EF hand family protein C.G. S.X.
0.04 4e-1 36 Ptp.7966.1.S1_s_at DN502719 hypothetical protein - 5e+0 At5g09510 40S ribosomal protein S15 (RPS15D) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g42030 834208 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.2464.3.S1_s_at BQ740648 - - 3e-16 At5g15650 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig21045_at Contig21045 - - 4e+0 At5g51130 methyltransferase C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.14188.1.S1_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum Ta.4828.3.S1_a_at BJ267543 - - 3e-1 At5g04800 40S ribosomal protein S17 (RPS17D) C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1621787_at AY427122.1 - - 1e-1 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.485.1.S1_at AI691349 - - 8e-1 Atmg00140 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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